Report for 2712.m00172

 > 2712.m00172, length: 1065, copies: 2 

MAMALASFLLLLLSVFMSIFLHFMAVRGADGEDAAALLAFKAVAVGNGGGNGVLASWNGSAGPCSWEGVACGRHG

RVVALSLPGHDLSGTLSPAVGNLTSLRKLDLSYNWLHGGIPASLGQLHRLRELDLSFNTFSGEVPSNLTSCTSLE

YLALGSNKLAGHIPSELGNTLTQLQVLGLDNNSFVGHWPASLANLTSLGYLSLRMNSLEGTIPPEFGSNMPRLYF

LDICSNNLSGALPSSLYNLSSLMGFDAGNNKLDGSIATDIDEKFPHLQSFAVFNNQFSGEIPSSFSNLTNLTSLQ

LSMNGFSGFVPHNLGRLNALQNLQLGVNMLEAGDIKGWEFVESLTNCSKLEILVLSNNNFTGQFPISIANLSKTL

QKLYLGGSRISGSIPSDFGNLVGLRSLYLFSTDISGVIPESIGKLENLTTLYLNNNSLSGHVPSSVGNLTNLMKL

FMQGNNLEGPIPANLGKLKSLNVLDLSRNHFNGSIPKEILELPSISQYLNLSYNSLSGPLPSEVGSLTSLNELIL

SGNQLSGQIPSSIKNCIVLTVLLLDSNSFQGTIPVFLGDIKGLRVLNLTMNKFSGVIPDALGSIHNLQELYLAYN

NLSGPIPAVLQNLTSLSMLDLSFNDLQGEVPKEGIFKNLSYLSLAGNSELCGGISHLNLPPCSMHAVRKRSKGWL

RSLKIALASIAVVLFLALVMVIIMLIRRRKPVHRKKGQSLTPVVEEQFERVSYQELSNGTKGFSQNSLLGKGSYG

VVYKCTLFDEEIVVAVKVFNLERSGSTRSFLAECDALRSVRHRCLLKIITCCSSINNQGQDFKALVFEFMPNGSL

NGWLHPKSDMPIADNTLSLTQRLDIAVDIVDALEYLHIHCQPPIVHCDLKPSNILLAEDMSARVGDFGISRILTE

SASKTQQNSSNTIGIRGSIGYVAPEYGEGSAVSTLGDVYSLGILLLEMFTGMSPTDDMFRDSLDLHSFSEAAHPD

RILEIADPTLWVHVDAEDSITRSRMQECLISVIGLGLSCSKHQPKERMPIQDAALKMHAIRDDAYLMFSGSLSVD

MEEETKQISSDLKQQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	100	123	0.02
LRR [Pfam ls]	124	147	0.099
LRR [Pfam ls]	148	172	2.3
LRR [Pfam ls]	197	221	8.1
LRR [Pfam ls]	222	245	4.7
LRR [Pfam ls]	271	294	4.5
LRR [Pfam ls]	295	318	8.8
LRR [Pfam ls]	349	372	0.24
LRR [Pfam ls]	374	397	0.024
LRR [Pfam ls]	398	421	1.5
LRR [Pfam ls]	422	445	0.011
LRR [Pfam ls]	446	469	6.6
LRR [Pfam ls]	470	494	0.34
LRR [Pfam ls]	519	542	0.39
LRR [Pfam ls]	567	590	5.8
LRR [Pfam fs]	591	614	6.3e-05
LRR [Pfam ls]	591	614	0.0011
LRR [Pfam ls]	615	640	1.1
Ser/Thr pkinase [Pfam fs]	738	970	2.4e-53
Ser/Thr pkinase [Pfam ls]	738	1028	5.9e-47

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	100	123	0.001
LRR [sensitive, ls]	100	123	0.02
LRR [sensitive, ls]	124	147	0.005
LRR [sensitive, ls]	124	147	0.099
LRR [sensitive, ls]	148	172	0.12
LRR [sensitive, ls]	148	172	2.3
LRR [sensitive, ls]	173	196	2.1
LRR [sensitive, ls]	173	196	41
LRR [sensitive, ls]	197	221	0.41
LRR [sensitive, ls]	197	221	8.1
LRR [sensitive, ls]	222	245	0.24
LRR [sensitive, ls]	222	245	4.7
LRR [sensitive, ls]	271	294	0.23
LRR [sensitive, ls]	271	294	4.5
LRR [sensitive, ls]	295	318	0.45
LRR [sensitive, ls]	295	318	8.8
LRR [sensitive, ls]	349	372	0.012
LRR [sensitive, ls]	349	372	0.24
LRR [sensitive, ls]	374	397	0.0012
LRR [sensitive, ls]	374	397	0.024
LRR [sensitive, ls]	398	421	0.076
LRR [sensitive, ls]	398	421	1.5
LRR [sensitive, ls]	422	445	0.00058
LRR [sensitive, ls]	422	445	0.011
LRR [sensitive, ls]	446	469	0.34
LRR [sensitive, ls]	446	469	6.6
LRR [sensitive, ls]	470	494	0.017
LRR [sensitive, ls]	470	494	0.34
LRR [sensitive, ls]	495	518	3.3
LRR [sensitive, ls]	495	518	65
LRR [sensitive, ls]	519	542	0.02
LRR [sensitive, ls]	519	542	0.39
LRR [sensitive, ls]	543	566	1.1
LRR [sensitive, ls]	543	566	21
LRR [sensitive, ls]	567	590	0.29
LRR [sensitive, ls]	567	590	5.8
LRR [sensitive, ls]	591	614	5.4e-05
LRR [sensitive, ls]	591	614	0.0011
LRR [sensitive, ls]	615	640	0.054
LRR [sensitive, ls]	615	640	1.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	1	647	3e-96
Xa21 [O. sativa]	5	848	1e-165
CLV2 [A. thaliana]	30	651	1e-67
Cf-9 [L. pimpinellifolium]	56	622	3e-62
Cf-9 [L. pimpinellifolium]	77	660	1e-57
FLS2 [A.thaliana]	79	559	3e-68
FLS2 [A.thaliana]	84	1039	1e-144
Pto [L. esculentum]	725	985	9e-24
Rpg1 [Hordeum vulgare]	727	1022	4e-25
Rpg1 [Hordeum vulgare]	731	951	2e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	26	in -> out
putative TM domain	680	702	out -> in

Report for 2712.m00172

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)