Report for 2720.m00055

 > 2720.m00055, length: 506, copies: 2 

MPDVEAGSVVDPPQARSCCCCACLRGNTGKFLLRTATVVILFLAVRFGFARHSVGAKLAVESVAYVATACLYFCS

FSSWKEKTVSGTFLAVVTVVVVSVEATTGNDHGVAILIGTIVALVVYCIWKPYQALLSCIERRLRRKAAAAATAA

EPLPPEKKEDAGRPLVQAERLRAAFRIDGLLREYSHGEIQAMTDNFGCVVGRGGSATVFRGVLDDGTAVAVKRIV

CDESVGEADFLSEITIVASVHHYALVGLLGYCLQPGGGRYLLYPFYENRSLDYWLFSGEERRRHVAVDVAKGLAY

LHHECKNQILHLDIKPANILLDGDFRAHVSDFGISMSIGRDLTSVDTRWRGTLGYMAPEMLVNALSAKSDVYSYG

MMLFELVGGRRNFELAGSGGASQARAPPDFTKEFLPCVMRDRMEEGRLMEVVDATMARGDGGGAAGVDEEEVEVV

VKVALWCTQHSRDMRPGMTDVVDMLEGRAPIPPPPVRPEFLGDTFLVSCARTAMSR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam ls]	194	477	6.4e-25
Ser/Thr pkinase [Pfam fs]	199	382	5.2e-32

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	181	475	1e-30
Rpg1 [Hordeum vulgare]	182	486	9e-23
Rpg1 [Hordeum vulgare]	183	476	1e-21
Pto [L. esculentum]	188	476	3e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	31	50	out -> in
putative TM domain	62	79	in -> out
putative TM domain	83	102	out -> in
putative TM domain	109	131	in -> out

Report for 2720.m00055

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)