Report for 2738.m00162

 > 2738.m00162, length: 1022, copies: 1 

MTRYKLLFMTLLLLLLHTQLVVPSSSATSATYTNHTGVPPSAVPCMPDQASALLRLKRSFSITNKSVIALRSWNA

GEDCCRWEGVRCGGGGTAAAGGRVTWLDLGDRGLKSGHLDQVIFKLNSLEYLNLAGNDFNLSEIPFTGFERLSML

THLNLSSSNFAGQVPVHSIGQLTNLISLDLSFRFKVTELFDMGYLYTGAYSHEWQLVLPNLTALVANLSNLEELR

LGFLDLSHQEADWCNALGMYTQNLRVLSLPFCWLSSPICGSLSNLRSLSVIDMQFSGLTGRFPDFFANLSSLSVL

QLSFNHLEGWVPPLIFQKKKLVAIDLHRNVGLSGTLPDFPVDSSLEILLVGHTNFSGTIPSFISNLKSLKKLGLD

ASGFSGELPSIIGTLRHLNSLQISGLEVVESFPKWITNLTSLEVLEFSNCGLHGTIPSSIADLTKLTKLALYACN

LFGEIPRHIFNLTQLDTIFLHSNSFTGTVELASFLTLPNLFDLNLSHNKLTVINGESNSSLTSFPNIGYLGLSSC

NMTRFPNILKHLNKNEVNGIDLSHNHIQGAIPHWAWENWKDAQFFFLNLSHNEFTRVGHTIFPFGVEMLDLSFNK

FEGPIPLPQNSGTVLDYSNNRFSSIPPNISTQLRDTAYFKASRNNISGDIPTSFCSNKLQFLDLSFNFFSGSIPP

CLIEVAGALQVLNLKQNQLHGELPHYFNESCTLEALDFSDNRIEGNLPRSIASCRKLEVLDIQNNHIADYFPCWM

SAFPRLQVLVLKSNKFFGQVAPSVGEDSSCEFPSLCILDLASNKFSGTLSEEWFTRLKSMMIDSVNGTSVMEYKG

DKKRVYQVTTVLTYKGSTMRIDKILRTFVFIDVSNNAFHGSVPKAIGELVLLNTLNMSHNSLTGPVPTQLSHLNQ

MEALDLSSNELSGVILQELASLHFLTTLNLSYNRLVGRIPESTQFSTFLNNSFLGNDGLCGPPLSKGCDNMTLNV

TLSDRKSIDIVLFLFSGLGFGLGFAIAIVIAWGVPIRKWSLLGQRVP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	123	148	0.36
LRR [Pfam ls]	149	173	6.1
LRR [Pfam ls]	248	271	0.35
LRR [Pfam ls]	272	295	9.2
LRR [Pfam ls]	344	367	4.5
LRR [Pfam ls]	416	439	0.076
LRR [Pfam ls]	489	512	0.65
LRR [Pfam ls]	516	538	7.9
LRR [Pfam ls]	541	565	5
LRR [Pfam ls]	658	682	0.1
LRR [Pfam ls]	707	730	2.2
LRR [Pfam ls]	731	754	7.4
LRR [Pfam ls]	784	808	1.1
LRR [Pfam ls]	876	899	4.7
LRR [Pfam ls]	900	923	6.3
LRR [Pfam ls]	924	946	3.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	98	122	6.4
LRR [sensitive, ls]	98	122	130
LRR [sensitive, ls]	123	148	0.018
LRR [sensitive, ls]	123	148	0.36
LRR [sensitive, ls]	149	173	0.31
LRR [sensitive, ls]	149	173	6.1
LRR [sensitive, ls]	220	243	2.3
LRR [sensitive, ls]	220	243	44
LRR [sensitive, ls]	248	271	0.018
LRR [sensitive, ls]	248	271	0.35
LRR [sensitive, ls]	272	295	0.47
LRR [sensitive, ls]	272	295	9.2
LRR [sensitive, ls]	296	319	4.4
LRR [sensitive, ls]	296	319	87
LRR [sensitive, ls]	320	343	1.2
LRR [sensitive, ls]	320	343	23
LRR [sensitive, ls]	344	367	0.23
LRR [sensitive, ls]	344	367	4.5
LRR [sensitive, ls]	368	391	2.4
LRR [sensitive, ls]	368	391	46
LRR [sensitive, ls]	392	415	2.7
LRR [sensitive, ls]	392	415	53
LRR [sensitive, ls]	416	439	0.0038
LRR [sensitive, ls]	416	439	0.076
LRR [sensitive, ls]	440	463	0.65
LRR [sensitive, ls]	440	463	13
LRR [sensitive, ls]	464	488	0.62
LRR [sensitive, ls]	464	488	12
LRR [sensitive, ls]	489	512	0.033
LRR [sensitive, ls]	489	512	0.65
LRR [sensitive, ls]	516	538	0.4
LRR [sensitive, ls]	516	538	7.9
LRR [sensitive, ls]	541	565	0.25
LRR [sensitive, ls]	541	565	5
LRR [sensitive, ls]	568	588	7.1
LRR [sensitive, ls]	568	588	140
LRR [sensitive, ls]	590	611	0.73
LRR [sensitive, ls]	590	611	14
LRR [sensitive, ls]	658	682	0.0053
LRR [sensitive, ls]	658	682	0.1
LRR [sensitive, ls]	683	706	1.6
LRR [sensitive, ls]	683	706	31
LRR [sensitive, ls]	707	730	0.11
LRR [sensitive, ls]	707	730	2.2
LRR [sensitive, ls]	731	754	0.38
LRR [sensitive, ls]	731	754	7.4
LRR [sensitive, ls]	755	779	4.6
LRR [sensitive, ls]	755	779	90
LRR [sensitive, ls]	784	808	0.056
LRR [sensitive, ls]	784	808	1.1
LRR [sensitive, ls]	852	875	2.4
LRR [sensitive, ls]	852	875	47
LRR [sensitive, ls]	876	899	0.24
LRR [sensitive, ls]	876	899	4.7
LRR [sensitive, ls]	900	923	0.32
LRR [sensitive, ls]	900	923	6.3
LRR [sensitive, ls]	924	946	0.17
LRR [sensitive, ls]	924	946	3.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	45	1014	2e-89
CLV2 [A. thaliana]	47	802	3e-36
FLS2 [A.thaliana]	99	747	3e-42
FLS2 [A.thaliana]	99	493	9e-21
CLV2 [A. thaliana]	112	612	4e-22
Xa21 [O. sativa]	135	747	1e-42
FLS2 [A.thaliana]	209	961	2e-67
Xa21 [O. sativa]	249	770	4e-36
CLV2 [A. thaliana]	340	976	7e-55
Xa21 [O. sativa]	353	961	6e-40
FLS2 [A.thaliana]	363	993	5e-30
FLS2 [A.thaliana]	591	973	1e-21
CLV2 [A. thaliana]	620	1001	3e-29
CLV2 [A. thaliana]	639	947	3e-14
FLS2 [A.thaliana]	715	962	8e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	985	1007	out -> in

Report for 2738.m00162

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)