Report for 2780.m00178

 > 2780.m00178, length: 2003, copies: 1 

MGELVTSMVIGPLVHMVKEKASSYLLEQYKVMEGMEVQHKILKRKLPAILDVISDAEKQASEHREGAKAWLEELK

AVAYEANEVFDEFKYEALRREAKKNGHYTKLGIDAVKLFPTHNRVVFRYKMGRKLCRIVQNIEVLVAEMNAFGFK

FEPQSIESKEWRLTDSDIFDPMNIASRSRDEDKKLLVSILLSQASNVKLAVLPIVGMGGLGKTTLAKLIYNEPEI

QNHFQLMIWVCVSDNFDVASVARSIVDAVPKKGDKVTINENQTSALDELQKLVSGQRYLLVLDDVWNRDDEKWRK

LKKCLEHGSTGSAVLATTREGGVAELMHTTDAYNLTALNNSVIKEIIDTAAFRPKKEIKPAELVQMDDKSLLSKK

KEMIDQFVERCAGLPLAAKALGSVLYTKTSLEEWEAVLRSSSICTKETGILPILKLSYDNLPSHMKQITRLIRIA

NGLIPEIKDIRLETTGEAGTGSGCSNVGELQHLDISGQLELRQMENVNEEDARLMKLENKKLSTLSLVWNENDKE

DRSYTNASDCHEKFWQLQDLQVLRLDGFHGLQYLCSIGQNSEIPSTFPKLKELKLTNLKSFNRWWEINERQEKLD

FPQLEKLVIKGCGELTSLPTSDSNMSEPALPALKELELCDLNQFERWQAAEGTQDKPPTFPNLENISIVKCPELT

SLPEAPKLSVLDIGNGSEQMLLCIPRYMASLSTLRLQHEGEETTPLTERFLIEWVDGKDNQNREYPLPVMKLVGF

NVFFRSGAQALWACFAQLKDLVIISCDGLIHWPEREFQSLVALRTLVIQRCSKLKGFSPQALEQSTSGREILLPR

LESLSIHECESLVEIFNAPPSLKEMDIDDNPKLESIFGQQRHGPAGPCSDNIVSAVALEPSSPAGDRFSPPESLE

SHSGELPSLVQLNLHHCKSLASLQDSPQAYSSLQQLIINECPALKVLPTCLRQQLPSLKRKYLDAHHEGLFLMDR

QWMYADQRSKEFIDGVHYFLRVAEANRQRGFICCPCNKCKNQKEYSASRTIHFHLFESGFMPSYNCWTSHGEHGV

EMEEDEVEDDNIPDFAQYVGFEGNQTGEEEIAAGGNDVADDLGQMLQDAREDCESEKEAHKLDKMLEDHRTSLYP

GCEQGHKKLDTTLELLQWKAKNRVSDKVFGDLLKLVKNILPGGNKLPETTYEAKKIVCPLGLEVHKIHACPNDCI

LYRGEEYENLEACPVCKALRYKIRRDDPGEVDGQLTKKRIPAKVMWYFPIIPRLRRLFRNKGNARMLRWHAEERQ

QDGMLRHPADGPKQPGNDIDVYLRPLVEDLKQLWKMEGVPVWDEDKQEEFNLRALLFVTINDWPALSNLSGQSNK

GYKACTHCMDETESMYLKHCRKVVYMDHRRFLAANHPVRKKGKHFEHKADHRTKPKHRSGKTVFAMVKDLKVVFG

KGPGSQLIKSEDGHAAMWKKNSIFWELPYWEFLDVRHAIDVMHLTKNLCVNLLGFLGVYGKSKDTLEARNDLKHM

EQRGDLHPEPKEKGSHYLSPASYTLSKAEKESMFECLESIKVPSGYSTNIKRIISTKEKKFTNLKSHDCHVLMTQ

LLPVVIRGILPDNVRATITKLCAFMNAISQKVIYPDRLEALQNEVVQCLVSFELIFPPSFFNIMTHLLCHLVKEI

RILGPMYLHNMFPFERYMGVLKKYVRNRARPEGSIAKGYGTEEVIEFCVEFIEDLRPIGVPESRHEGRLRGKGTL

GRKAITTVDNNLFRKAHFTVLQHSSLVAPYIEEHLALVRARNIGKSDAWITRHHIDTFPAWLRQHLMGNESINQQ

LAFLARGPSGSIATFQGYEINGYTFYTRAQDMKSTNQNNAVRVDAMGHDGTTATYYGAIEDIWELDYGPLKVPLF

RCQWVRLTGGGVMIDDSGMTTVDLNKVGYSDEPFVLANDVTQVFFVKDMSSKGKKGRGPDEPKRQVVLPGKRKIV

GVEDKTDEDYDQLDGQPPFTVTIDPSILLSNEDTPYSRSDHKEGTIVRRKYVP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	157	475	2.3e-34
NB-ARC [Pfam fs]	199	327	1.6e-31
NB-ARC [Pfam fs]	383	443	2.1e-13

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	603	626	1.6
LRR [sensitive, ls]	603	626	32
LRR [sensitive, ls]	662	684	1.9
LRR [sensitive, ls]	662	684	37
LRR [sensitive, ls]	792	816	0.86
LRR [sensitive, ls]	792	816	17
LRR [sensitive, ls]	825	848	2.4
LRR [sensitive, ls]	825	848	48
LRR [sensitive, ls]	908	931	2.1
LRR [sensitive, ls]	908	931	41
LRR [sensitive, ls]	932	952	4.2
LRR [sensitive, ls]	932	952	82

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	8	441	1e-22
RPM1 [A. thaliana]	23	671	4e-24
I2 [L. esculentum]	40	960	6e-51
Pib [Oryza sativa].	179	441	4e-15
Xa1 [Oryza sativa]	179	442	2e-30
N [N. glutinosa]	201	861	9e-13
RPS2 [A. thaliana]	201	473	7e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Transposase family tnp2	1265	1421	1.1e-73

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2780.m00178

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)