Report for 2780.m00180

 > 2780.m00180, length: 1332, copies: 1 

MATSMLLGPLIALVNRQVSNYLLQQYQELDGMEEQLTILERKLPAILDVIIDAEEQGTHRPGVSAWLKALKAVAY

KANDIFDEFKYEALRREAKRRGNHGNLSTSIVLANNPLVFRYRMSKKLRKIVSSIEDLVADMNAFGFRYRPQMPT

SKQWRQTDSIIIDSENIVSREKEKQHIVNLLLTDASNRNLMVLPIIGMGGLGKTTFAQIIYNDPEIQKHFQLRKW

VCVLDDFDVTSIANKISMSIEKECENALEKLQQEVRGKRYLLILDDVWNCDADKWAKLKYCLQQYGGVGSAILMT

TRDQGVAQLMGTTKAHQLVRMEKEDLLAIFEKRAFRFDEQKPDELVQIGWEIMDRCHGSPLAAKALGSMLSTRKA

VEEWRAVLTKSSICDDENGILPILKLSYDDLPSYMKQCFAFCAIFPKNYVIDVEMLILLWMANDFIPSEEAIRPE

TKGKQIFNELASRSFFQDVKEVPLHKDESGHSYRTICSIHDLMHDVAVSVIGKECFTIAEGHNYIEFLPNTVRHL

FLCSDRPETLSDVSLKQRCQGMQTLLCIMNTSNSSLHYLSKCHSLRALRLYYHNLGGLQIRVKHLKHLRFLDLSG

NCHIKSLPEEICILYNLQTLNLSGCISLGHLPKDIKNMIGLRHLYTDGCMSLKSMPPNLGHLTSLQTLTYFVVGN

NSGCSSIGELRHLKLQGQLQLCHLQNVTEADVSMSSHGEGKDLTQLSFGWKDDHNEVIDLHEKVLDAFTPNSRLK

ILSVDSYRSSNFPTWVTNPTMMQDLIKLQLVSCTMCESLPQLWQLPSLEILHLEGLQSLQYLCSGVDNSTSSTFP

KLRELILVDLKSLNGWWEVKGGPGQKLVFPLLEILSIDSCSNLENFPDAVIFGESSQFLDNKGNSPFPALKNLKL

HNLKSLKAWGTQERYQPIFPQLENANIMECPELATLPEAPKLRVLVFPEDKSLMWLSIARYMATLSDVRLTIAAS

SSQVQCAIQQVSGTEEFSHKTSNATMELRGCYFFCMDWECFVNLQDLVINCCNELVYWPLKQLQCLVSLKRLTVY

SCNNLTKSGDVLEAPLEKNQLLPCLEYIEIKDCPKLVEVLILPSSLREIYIERCGKLEFIWGQKDTENKSWYAEN

KDDLRSESYSILVSSADAPLATNTHLPCMESLTVISCQSLVVLLNFPLYLKEIHIWSCPELRSIRGKQDIKVESK

YVERNNGMAISESSSDLSASITIEDQGTWRSKYLLPCLEYLRIAYCVSLVEVLALPSSMRTIIISECPKLEVLSG

KLDKLGQLDIRFCEKLKLVESYEGSFSSLETVSIVGCENMASLPNKHSNTPCTKGSA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	152	446	1.2e-70
NB-ARC [Pfam ls]	152	446	3.5e-71
LRR [Pfam ls]	592	615	0.61
LRR [Pfam ls]	616	639	0.084

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	569	591	2.7
LRR [sensitive, ls]	569	591	53
LRR [sensitive, ls]	592	615	0.031
LRR [sensitive, ls]	592	615	0.61
LRR [sensitive, ls]	616	639	0.0043
LRR [sensitive, ls]	616	639	0.084
LRR [sensitive, ls]	640	663	3.8
LRR [sensitive, ls]	640	663	75
LRR [sensitive, ls]	667	689	2.4
LRR [sensitive, ls]	667	689	47
LRR [sensitive, ls]	797	820	4.9
LRR [sensitive, ls]	797	820	97
LRR [sensitive, ls]	856	880	4.2
LRR [sensitive, ls]	856	880	84
LRR [sensitive, ls]	1043	1063	6.1
LRR [sensitive, ls]	1043	1063	120
LRR [sensitive, ls]	1258	1281	3.7
LRR [sensitive, ls]	1258	1281	72

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	22	1318	1e-119
RPM1 [A. thaliana]	28	646	6e-49
Pi-ta [Oryza sativa]	31	620	8e-20
Pib [Oryza sativa].	50	342	3e-11
RPS2 [A. thaliana]	66	872	3e-37
Xa1 [Oryza sativa]	157	1318	9e-76
M [L. usitatissimum]	158	1108	1e-19
Pib [Oryza sativa].	163	645	5e-38
N [N. glutinosa]	165	873	2e-20
Mla1 [Hordeum vulgare].	170	697	6e-41
RPP5 [A. thaliana]	187	1102	1e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2780.m00180

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)