Report for 2780.m00182

 > 2780.m00182, length: 1285, copies: 1 

MADLVTSMVIGPLVSMVKEKASSYLLEQYKVMEGMEEQHEILKRKLPAILDVISDAEEQASHRQGVKAWLEALKK

VAYEANDIFDEFKYEALRREAKKNGHYRGLGMDAVKLFPTHNRIMFRYTMGKKLRRIVQIIEVLVAEMNAFGFKY

QRQSLASKQWRQTDSIIDYSEKDIVERSRETEKQKIVRSLLENNDIMVLPIVGMGGLGKTTFAKLIYNEPQIKEH

FQLNRWVCVSDEFDLSKIASKISMTTNEKDCDNVLQKLQQEVSGKRFLLVLDDVWNRDVDKWSKLKTCLQQGAAG

SVILTTTRLAEVAQIMGTVQAHNLTTLDNRFLWEIIERRAFYLKKEKPSELVDMVDKFVDRCVGSPLAARAVGSV

LSNKTTPKEWNTLLSKSVIFDDDSGILPILKLSYDDLPSQMKLCFAFCAIFPKDYEIDVEMLVKLWMANDFIPSE

NGVGLEKVGNRIFNELARRSFFQDVDETSLFKMYRRDKLCQFRKTCKIHDLMHDIALYVMREECVTVMGRPNSIQ

LLKDSSRHLFSSYHRMNTLLDAFIEKRILPLRTVMFFGHLDGFPQHLLKYNSLRALCIPNFRGRPCLIQAKHLHH

LRYLNLSHSWNMERLPEEISILYNLQTLDLSDCCSLRCLPKNMKYMTSLRHLYTQGCTDLECMPPELRKVTALQT

LTYFVVGNSSDCSNVGEIHDLNLGGELELGKLENANEEQAIAANIKEKVDLTHLCFKWSNDIEKDPEHYQNVLGA

LRPHAKLQLLKVQSFKGTNFPTWMTDVCTFMNLTEIHLVDCPLCKEIPKFWKLPALEVLHLTGLNKLQSLCSGAS

DVIMCSAFQKLKKLKLQHLKSLKRWGTMEGKLGDEAIFPVLEDIHIKNCPELTVIPEAPKIGTLKLEENKPHLSL

LVVGSRYMSLLSKMELSIDDIEAALIPDQSSVETLDDKDIWNSEASVTEMKLDGCNMFFPTTPSKPTVGLWKWCK

YLQKLEIKSCDVLIHWPQREFQSLESLNELTVESCKNLKGIMPVDGEPIQGIGQLLPRLKFLGIRNCQELTEIFN

LPWSLKTIDIYRCPRLKSIYGKQEDSESGSAHAEQLTTLLSKRMPDPSSSAAAAATEHLLPCLEHLNIGHCDSFT

KVPDLPPSLQILHMYNCPNVRFLSGKLDALDSLYISDCKNLRSLGPCLGNLPSLTSLSIYRCKSLVSLPDGPGAY

SSLETLEIKYCPAMKSLPGRLQQRLDSLEEKDLSNMRSSDPWEGIHSAFHFSFLRAVDPLCPGGMYRKSGILLNK

LFFACCVLLN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	158	452	6.1e-64
NB-ARC [Pfam ls]	158	452	2.5e-64
LRR [Pfam ls]	600	623	9.8
LRR [Pfam ls]	624	644	0.43
LRR [Pfam ls]	782	804	2.5
LRR [Pfam ls]	1112	1135	6.5
LRR [Pfam ls]	1154	1177	1.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	600	623	0.5
LRR [sensitive, ls]	600	623	9.8
LRR [sensitive, ls]	624	644	0.022
LRR [sensitive, ls]	624	644	0.43
LRR [sensitive, ls]	782	804	0.13
LRR [sensitive, ls]	782	804	2.5
LRR [sensitive, ls]	805	837	1.9
LRR [sensitive, ls]	805	837	38
LRR [sensitive, ls]	1001	1023	6.3
LRR [sensitive, ls]	1001	1023	120
LRR [sensitive, ls]	1033	1056	2.8
LRR [sensitive, ls]	1033	1056	54
LRR [sensitive, ls]	1112	1135	0.33
LRR [sensitive, ls]	1112	1135	6.5
LRR [sensitive, ls]	1154	1177	0.086
LRR [sensitive, ls]	1154	1177	1.7
LRR [sensitive, ls]	1178	1201	1.4
LRR [sensitive, ls]	1178	1201	27
LRR [sensitive, ls]	1202	1222	4.4
LRR [sensitive, ls]	1202	1222	87

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	1	654	1e-43
Mla1 [Hordeum vulgare].	9	698	1e-37
I2 [L. esculentum]	42	1217	1e-115
Pib [Oryza sativa].	143	659	1e-36
Pi-ta [Oryza sativa]	179	629	2e-24
N [N. glutinosa]	180	664	3e-12
Xa1 [Oryza sativa]	180	1219	4e-76
RPS2 [A. thaliana]	181	881	3e-33
RPP5 [A. thaliana]	596	1218	2e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2780.m00182

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)