Report for 2780.m00186

 > 2780.m00186, length: 1143, copies: 1 

MAELVTSMVIGPLVSMVKEKASSYLRDKYKVMEGMEEQHEILKRKLPAILDVITDAEEQASHREGAKAWLEALKK

VAYEANDIFDEFKYEALRREAKKNGHYRELGMNAVKLFPTHNRIVFRYRMGNKLRRIVQFIEVLVAEMNAFGFKY

QRQALASKQWRQTDSIIDYSEKDIVERSRAAEKQKIVKALLENDDIMVLPIVGMGGLGKTTFAKLIYNEPKIQEN

FQLKRWVCVSDEFDLGEIASKITMTTNDKDCDKALQKLKQEVCGKRYLLVLDDVWNRDADKWAKLKTCLVQGGAG

SAILTTTRLTEVARTMGSVQAHNLTTLEKSFLREIIERRAFNLQKEKPSELVDMVDKFVDRCVGSPLAARALGSV

LSNRTTPEEWSTLLRKSVICDDDSEILPILKLSYEDLPSQMKQCFAFCAVFPKDYEIDVEMLVKLWMANDFIPSK

DGVCLEKIGHSIFNELARRSFFQDVEETLMSKYSLEYNLCRFRKMCKIHDLMHDIALHVMREECITVTGTPNSTR

LKDSSRHLFLSYDRTNTLLDAFFEKRTPLQTVLLDTIRLDSLPPHLLKYNSLRALYCRCFMGTNLIQPKHLHHLR

YLNLTYSQNMVRLPEEISILYNLQTLDLSACWPLRCLPKNMKYMTSLRHLYTHGCEQLECMPPELRKLTALQTLT

YFVVGNVSDSSNIGELQKLKLGGELDICNLENSNEEQANGANIEEKVDLTHLSFKWSSDIKKEPDHYENVLGALR

PPAKLQLLKVRSYKGAKFPAWMTDNSTLRHLTELHLVDCPLCMEFPEFWQLHALQVLYLIGLDNLQCLCSGASNI

MKLKLQDLKSLNRWSTMEGDELTFPLLEDIHVKNCPKLTFLPKAPILRILKLEENSPHLSQSVLVSGYMSSLSQI

KLSICADEAILLPVNEAEASVTKLKLFGCNMLFTTSQSRTTLGLWQCFRNLEKLELKSCDVLLFWPLREFHSLES

LKELIVKSWFRDLPSSLQSLALFNCPKVQFLSGKLDALTCLAISGCETLRSLESCLGDLPSLTTLMIERCKSLTS

LPDGPRAYSSLESLEIKYCPAMKSLPGCLKQRLDSVEEKLLSHMRSSDPREGSMGYGNHSSYQELVLNCWNQNLG

NMSFVGTEICDPTLLMRP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	158	452	3.9e-62
NB-ARC [Pfam ls]	158	452	1.9e-62
LRR [Pfam ls]	622	642	3.5
LRR [Pfam ls]	780	802	9.8

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	598	621	2.1
LRR [sensitive, ls]	598	621	41
LRR [sensitive, ls]	622	642	0.18
LRR [sensitive, ls]	622	642	3.5
LRR [sensitive, ls]	646	669	2.4
LRR [sensitive, ls]	646	669	47
LRR [sensitive, ls]	780	802	0.5
LRR [sensitive, ls]	780	802	9.8
LRR [sensitive, ls]	991	1014	2.3
LRR [sensitive, ls]	991	1014	46
LRR [sensitive, ls]	1036	1056	1.5
LRR [sensitive, ls]	1036	1056	30
LRR [sensitive, ls]	1060	1080	3.1
LRR [sensitive, ls]	1060	1080	61

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	9	708	2e-42
RPM1 [A. thaliana]	23	905	5e-41
I2 [L. esculentum]	42	1073	1e-103
Pib [Oryza sativa].	179	651	9e-35
Pi-ta [Oryza sativa]	179	630	3e-23
Xa1 [Oryza sativa]	179	1140	4e-74
RPS2 [A. thaliana]	184	707	7e-29
N [N. glutinosa]	187	914	9e-16
RPP5 [A. thaliana]	191	1076	7e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2780.m00186

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)