Report for 2784.m00152

 > 2784.m00152, length: 990, copies: 1 

MGTVLDALAWKFLEKLGQLIEDEVIMTLSVKRGIESLKKNLEFFNAVREDAEALAMEDPGIDSWWKNMRNVMFDV

DDIVDLFMVHSQKFLLPPRPVCCNQPLFSSFAKFSFDHRIAKRIDNINEKFEEIKMNKEMFGFERTNRQQVQITI

VDRSQTSPVDELEVVGEDIRRAVDDMVKMIVSNYNDNRSTVFGIQGMGGIGKTTLAQKIYNEQRIREKFQVHIWL

CISQNYTETSLLKQAIRMAGGICDQLETKTELLPLLVDTIRGKSVFLVLDDVWKSDVWIDLLRSPSERGLNSRIL

VTSRNLDVLVEMHATYTHRVNKMNDYDGLELLMKMSLGPYEQRREFSGVGYQIVKKCDGLPLAIKVVAGVLSSKK

TKAEWESIRDSKWSIHGLPKELGGPLYLSYSNLPPELKQFFLWCALLPSNFGIHRDAVAYWWVAEGFVTKMHGYS

IHEAAEEYYHELIRMNLLQPKPEFVDKWMSTMHDLLRSLGQFLTKDHSLFMNMENSKTLLNLRHLVISNDVKEIP

AIEELKCLRSLLIFNNKNFKTINKDIFRELKHIRVLVLSGTSIQVIPESVGNLLLLRLLDLSYTKIKKLPESIGN

LTSLEYLSLHCCRHLDSLPASLMRLSNISFLELEQTGIDHVPKGIAKFQKLYNLKGVFESASGFRLDELQCLPNI

QRLRIVKLEKATPGGAFVLRNSLRLRELWFRCTMGANTHDITHYQMNEIERIQQVYEMLSPSSSLIYLFFEGFPG

VRFPDWLCSEPEYKMPNLGHMYLNECISCSELPPAGQMPELLILQIRCADAVVNIGSELLGKGVSSATHITIFPK

LKLLHIIDMSNLESWSLNTGNLRGRSEQLVLMPCLKRLFLNGCPKLRALPEDLHRIANLRRIHIEGAHTLHEIDN

LPSVLWLKVKNNRCLRRISNLCILQDLFAQDCPALDQAENLISLKRLHMVDCQNAKQFRMCLLEDQQLAVDVVTV

GADGRDIFPDETLYN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	149	448	1.7e-52
NB-ARC [Pfam fs]	189	448	4.4e-54
LRR [Pfam ls]	532	556	0.66
LRR [Pfam ls]	557	579	1.3
LRR [Pfam ls]	580	602	0.052
LRR [Pfam ls]	603	626	3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	511	531	6.5
LRR [sensitive, ls]	511	531	130
LRR [sensitive, ls]	532	556	0.033
LRR [sensitive, ls]	532	556	0.66
LRR [sensitive, ls]	557	579	0.064
LRR [sensitive, ls]	557	579	1.3
LRR [sensitive, ls]	580	602	0.0026
LRR [sensitive, ls]	580	602	0.052
LRR [sensitive, ls]	603	626	0.15
LRR [sensitive, ls]	603	626	3
LRR [sensitive, ls]	627	649	2.4
LRR [sensitive, ls]	627	649	47
LRR [sensitive, ls]	767	789	6.2
LRR [sensitive, ls]	767	789	120
LRR [sensitive, ls]	859	882	0.58
LRR [sensitive, ls]	859	882	11
LRR [sensitive, ls]	883	906	5
LRR [sensitive, ls]	883	906	99

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	13	683	6e-49
RPM1 [A. thaliana]	19	889	3e-48
I2 [L. esculentum]	34	958	2e-70
RPS2 [A. thaliana]	112	890	2e-40
Pib [Oryza sativa].	153	651	5e-38
Pi-ta [Oryza sativa]	163	651	1e-23
Xa1 [Oryza sativa]	170	875	1e-35
L6 [L. usitatissimum]	173	495	2e-13
M [L. usitatissimum]	173	796	7e-14
N [N. glutinosa]	187	905	7e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	34	54

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2784.m00152

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)