Report for 2784.m00154

 > 2784.m00154, length: 989, copies: 1 

MGTVLDALAWKFLEKLGQLIEDEVIMTLSVKRGIESLKKNLEFFNAVHEDAEALAMEDPGIDSWWKNMRDVMFDV

DDIVDLFMVHSQKLLLPPRPVCCNQPLFSSFAKFSFDHMIAKRIDNINEKFEEIKMNKEMFGLERTNGQQIQITI

VDRSQTSPVDELEVVGEDIRRAIDDIVKMIVSSNYNESRSTVFGIQGMGGIGKTTLAQKIYNEQRIREKFQVHIW

LCISQNYTETSLLKQAIRMAGGICDQLETKTELLPLLVDTIRGKSVFLVLDDVWKSDVWIDLLRLPFLRGLNSHI

LVTSRNLDVLVEMHATYTHKVNKMNDCDGLELLMKMSLGPYEQSREFSGVGYQIVKKCDGLPLAIKVVAGVLSTK

RTRAEWESIRDSKWSIHGLPRELGGPLYLSYSNLPPELKQCFLWCALLPSNFVIRRDAVAYWWVAEGFVTEVHGY

SIHEVAEEYYHELIRRNLLQPRPEFVDKGESTMHDLLRSLGQFLTKDHSIFMNMEYSKALPNLRHLCISNDVEEI

PAIEKQKCLRSLLVFDNKNFMKINKDIFRELKHIRVLVLSGTSIQIIPESVGNFLLLRLLDLSYTKIQKLPESIG

KLTSLEYLSLHGCIHLDSLPDSLMRLSNISFLELEQTAIDHVPKGVAKLQQLYNLRGVFDSGTGFRLDELQCLSN

IQRLRIVKLEKAAPGGSFVLKNCLHLRELWLGCTIGGHDKTYYQTNEIERIQQVYELLIPSPSLLYIFLVGFPGV

RFPDWLCSEPERKMPNLGHMHLNDCTSCSVLPPAGQMPELLVFKIKGADAIVNMGAELLGKGVNSAKHITIFPKL

ELLLITNMSNLESWSLNTWNLCGKSEQLVLMPCLKRLFLNDCPKLRALPEDLHRIANLRRIHIEGAHTLQEVDNL

PSVLWLKVKNNRCLRRISNLCNLKDLLAQDCPALYQAENLISLKRLYMVDCHNAKQFRMSLLEDQQLAVHVVTVG

ADGRDIFPDESLYN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	149	449	6.1e-55
NB-ARC [Pfam fs]	152	449	4.3e-55
LRR [Pfam ls]	558	580	8.8
LRR [Pfam ls]	581	603	0.051
LRR [Pfam ls]	604	627	1.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	533	557	0.52
LRR [sensitive, ls]	533	557	10
LRR [sensitive, ls]	558	580	0.45
LRR [sensitive, ls]	558	580	8.8
LRR [sensitive, ls]	581	603	0.0026
LRR [sensitive, ls]	581	603	0.051
LRR [sensitive, ls]	604	627	0.072
LRR [sensitive, ls]	604	627	1.4
LRR [sensitive, ls]	628	650	2.8
LRR [sensitive, ls]	628	650	54
LRR [sensitive, ls]	766	788	4.9
LRR [sensitive, ls]	766	788	96
LRR [sensitive, ls]	858	881	0.69
LRR [sensitive, ls]	858	881	14
LRR [sensitive, ls]	902	924	3.8
LRR [sensitive, ls]	902	924	75

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	13	684	5e-46
RPM1 [A. thaliana]	19	888	1e-47
I2 [L. esculentum]	34	870	1e-73
RPS2 [A. thaliana]	112	889	8e-41
Pib [Oryza sativa].	153	652	4e-43
Pi-ta [Oryza sativa]	154	638	2e-25
L6 [L. usitatissimum]	163	500	3e-13
Xa1 [Oryza sativa]	170	988	4e-41
M [L. usitatissimum]	173	967	2e-17
N [N. glutinosa]	192	904	1e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2784.m00154

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)