Report for 2806.m00123

 > 2806.m00123, length: 1344, copies: 1 

MEAAVGAANWVVGMVLNKLSDELMAGYMASRELGLNMDQIKRDLNYMLALLQAAEGRDIADNLADLCNKADEAED

VLDELHYFVIRDELDGTREATPDLGDGLGAQLQHARHAARNTAAGNYWLSCFSSCCRSQSQQDDTVTGNNRNSSM

AISKTEEHDQSGANGHIQESLFDRVAMSKKIKSLIQDVHSLCPPISDLLQKCSPCVPPSMERPNTSSVITQNKLY

GRDAIFDQTMEQLLKGGAMHHTQNYIMSVLPIVGPGGVGKTTFAQHLYNDHRTKQHFTVMIWVCVSTTFDVTELT

TKILNSLNATESQGTNIRESSLDQLHKSIQDKLKSKRFLIVFDDIWEHDFSKAASTKRFSKTEWEKLLAPFGTGE

TNGNMVLVTTRFPKVAETVKKGANQVDLHGLEPDEFWDFFQLCAFSETQDDNDKEKLFDIGKQIAKKLKCSPLAA

KTVGPLLRKKPTRKHWMEILEKEEWLKQKDGDDSIITALKISYDYLPFYLKKCFSYLALFPEDYEFDSLEISCYW

DSIGIINSSGKNDTIEGIGSQYLNELYDNGFLMKGDDNHYVMHDLLHELSQIVSSRECANINYSSFRADDILPSI

RHLSITIQDKYTESFKEEMEKIKKRVDIRNLRSVMIFGSYRSRRIANVVRDTLNEIRALRVLFIFMNSPHSLPDN

FSKLVHLRYLKIGSPWGFKVCIPSTVSKLYHLKFLDLKSWGGSNNNLPNDFNRLINLRHFLAKKEFHSNVPEVGK

MKCLQELKEFHVKKDKIGFELAQLGQLEQLRGELCIFGLKNATREEAIEAKLKHKSNLSKLRLDRGGNREKNTSS

SSSRTQVVSNENQDDDIILDSLQPHSNLTELSIVNLGGGMAPSWLGSNIIHLDTLHLDGLERLDCISCPKLNELP

LSSCSSSSCTMWFPKLRRLNITRCLELSVPLVPHTSTLTYVRVNDSVRGFNTSKKLTLDGYNGALAFQNLGNLEE

IYIGDVHNMSLIDFQQLRSLRRLTVTLCRDTFLRGLDEHVVVVFNSVRVLNLSGFLLTRKMLSNLFRCFPALYVL

SMSPSKESHEEVKLQIPSSCSLKTIRLFKCKNLILPPLDDGQGLVNLTSLRNLHIDDCGKIFSQWYMGKPAQTTS

NPFPSSLLELSICRESRIHSMALLSNLTALTSLQLIDCCNVTMDGFNPLITSNLNKLCISSCGSAPADLLAEMAR

TKTTMPQVAFQLKDLVVDSISAVLTAPICSFLAPTLHELGIKDDVDRVSSFSDEQEGALELLVSLKKLSFDGLWV

LQSLPEGLHKFPSLTELSISHCPQIQSLPKNGLPTSLETFSVFICSSALEEESKRFTEEKERYYSESDD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	210	536	6.8e-55
NB-ARC [Pfam ls]	210	536	7.3e-55
LRR [Pfam ls]	1288	1309	0.12

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	884	908	6.6
LRR [sensitive, ls]	884	908	130
LRR [sensitive, ls]	915	939	4.2
LRR [sensitive, ls]	915	939	83
LRR [sensitive, ls]	1021	1045	3.1
LRR [sensitive, ls]	1021	1045	60
LRR [sensitive, ls]	1071	1095	6.5
LRR [sensitive, ls]	1071	1095	130
LRR [sensitive, ls]	1264	1287	1.1
LRR [sensitive, ls]	1264	1287	22
LRR [sensitive, ls]	1288	1309	0.0059
LRR [sensitive, ls]	1288	1309	0.12

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	133	1279	1e-101
RPS2 [A. thaliana]	184	713	1e-22
RPM1 [A. thaliana]	190	780	3e-30
Pib [Oryza sativa].	209	754	9e-27
I2 [L. esculentum]	212	1320	1e-92
Pi-ta [Oryza sativa]	223	711	3e-18
Mla1 [Hordeum vulgare].	224	781	2e-26
Xa1 [Oryza sativa]	852	1329	4e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	57	82

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2806.m00123

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)