Report for 2828.m00155

 > 2828.m00155, length: 1155, copies: 1 

MVCELQELEATILPQFQLVIEAAEKSPHKGKIERWLRKLKAAFYDTEDVLDELEYDILKRVAEKGAQASLMVASS

NSVPKPLHAASNKMSNLRPKNRKLISKLEELKEILVEAKAFHDQLGIQAGNSTELMVTAPIRPNTTTSFSSSNVV

GRDEDRDRIIDILCKPVNAGGSMARWYSSLAIVGVGGMGKTTLAQHVYNDERVAQYFDARIWVCISRKLDVHRHT

QEIIESAGKGECPRIGNLDTLQCKLRDILQESEKFLLVLDDVWFDESKSETEWDWEQLLAPIASLQRGSKILVTS

RRNALPAVLDCKKIFPLESLKDTDFLTIFKSHAFSGAETSDPWLREKLEIAKKISRRLGQSPLAAKAVGSQLSRK

KDIATWRAALKNGNLSETRKALLWSYEKLDPRLQRCFLYCSLFPKGHQYEIDELVHLWVAEGLVDSCYQNNRMED

IGRDYFNEMVSGSFFQPVSKTYVGTRYIMHDLLHDLAEALSKEDCFRLDDDKVKEMPSTVRHLSVCVQSMTLHKQ

SICKLHHLRTVICIDPLTDDGTDIFNEVVRKLKKLRVLYLSFYNTTNLPESIAELNHLRYLNIIKTFISELPRSL

CTLYHLQLLQLNNKVKSLPHRLCNLSKLRHLEAYDNRIDILIKADLPQIPDIGKLSSLQHMNDFYVQKQKGYELR

QMRDMNELGGNLRVRNLENVYGKNEALEAKLHQKTRLKGLHLSWKHMGDMDIEGVSHFEILEGLMPPPQLERLTI

EGYKSAMYPSWLLDGSYFENLESFRLVNCSELGSLPSNTELFGRCMALTLWDVPNVKTLSFLPEGLTSLSIDRCP

LLLFSTNNELEHHDHSESSMRTDHLAKHVLIAEAGSGSDTRSALLSEHSSMKQLATLMCADISENLQTIKSNLEK

ERDEALVKEDTIEAWLCCHKERMRFIYSAKSGLPLVPPSGLCELYLSSCSITDGALALCIGGLTSLRELSLTNIM

TLTTLPSEEVLQHLANLNFLAIRSCWCIRSLGGLRAVSIKEMRLFSCPSLELACGAEFIPLSLRRLCIYRCVVGA

DFFCGDWPQMREILLCQCRSSASLHVGGLTSLELFALYHLPDLCVLEVSSSPRLHQVHLINVPKLTAKCISQFRV

QHSLHISSSLILNYMLSAEAFVLPAYLSLE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	132	444	8.4e-47
NB-ARC [Pfam ls]	132	444	2.2e-46

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	582	604	2.6
LRR [sensitive, ls]	582	604	52
LRR [sensitive, ls]	627	650	1.1
LRR [sensitive, ls]	627	650	22
LRR [sensitive, ls]	770	793	2.7
LRR [sensitive, ls]	770	793	54
LRR [sensitive, ls]	940	964	0.99
LRR [sensitive, ls]	940	964	19
LRR [sensitive, ls]	965	987	2.3
LRR [sensitive, ls]	965	987	45

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	5	1046	2e-93
Pi-ta [Oryza sativa]	12	662	2e-23
RPS2 [A. thaliana]	23	811	3e-25
Mla1 [Hordeum vulgare].	86	658	1e-37
Xa1 [Oryza sativa]	133	1097	3e-86
RPM1 [A. thaliana]	144	761	1e-41
M [L. usitatissimum]	146	426	1e-10
Pib [Oryza sativa].	147	633	1e-31
N [N. glutinosa]	148	662	3e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	95	115
putative coiled-coil	885	905

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2828.m00155

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)