Report for 2840.m00171

 > 2840.m00171, length: 697, copies: 1 

MPRNSGGGASAILLPLFLSALLLRCFVCYADGGGGGSLDADVAALSDFRLAADRSGALASWDLAANPAPCGTWRG

VSCAGGRVTRLVLEGFGLSGDAALPALARLDGLRVLSLKGNGLTGAIPDLSPLAGLKLLFLAGNSLSGPIPPSIG

ALYRLYRLDLSFNNLSGVVPPELNRLDRLLTLRLDSNRLSGGIDGIALPVLQDFNVSNNLLTGRIPVAMAKFPVG

AFGGNAGLCSAPLPPCKDEAQQPNASAAVNASATPPCPPAAAMVASSPSAKPAGAATSGKGKMSCAAVVAIVAGD

FAVVGLVAGLLFCYFWPRLSGRRSARRLREGEKIVYSSSPYGATGVVTAAGGTFERGKMVFLEDVSSGGGKRFEL

DDLLRASAEMLGKGGCGTAYKAVLGDGSVVAVKRLRDATAAAASKKDFEHHMAVLGRLRHPNIVPLNAYYYARDE

KLLVYEFMPNGSLFSLLHGNRGPGRTPLDWAARMRIASAAARGLAYIHHASRRGSGTPRLAHGNIKSTNILLDKA

GVGRLADCGLAQLGSSPAAAAARSAGYRAPEAPPPPRPWASQKGDVYAFGVVLLELLTGRCPGSELPNGGVVVEL

PRWVQSVVREEWTSEVFDLELMKDKGIEEEMVAMLQLALSCASAAPDQRPKIGYVVKMIEEIRACGEASPSHESM

DESSGVSVSDSPAVSEGGAISQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	107	129	0.68
LRR [Pfam ls]	154	177	0.55
Ser/Thr pkinase [Pfam ls]	380	659	9.5e-26
Ser/Thr pkinase [Pfam fs]	386	592	1.2e-28

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	107	129	0.034
LRR [sensitive, ls]	107	129	0.68
LRR [sensitive, ls]	130	153	0.65
LRR [sensitive, ls]	130	153	13
LRR [sensitive, ls]	154	177	0.028
LRR [sensitive, ls]	154	177	0.55
LRR [sensitive, ls]	178	199	1.9
LRR [sensitive, ls]	178	199	38
LRR [sensitive, ls]	200	223	0.94
LRR [sensitive, ls]	200	223	19

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	12	219	2e-20
FLS2 [A.thaliana]	36	221	1e-10
FLS2 [A.thaliana]	37	219	8e-17
FLS2 [A.thaliana]	93	681	7e-37
FLS2 [A.thaliana]	93	219	9e-11
CLV2 [A. thaliana]	94	222	2e-11
FLS2 [A.thaliana]	102	216	9e-13
Xa21 [O. sativa]	102	468	3e-16
Pto [L. esculentum]	372	660	7e-28
Rpg1 [Hordeum vulgare]	381	662	4e-12
Rpg1 [Hordeum vulgare]	385	662	2e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	291	313	out -> in
putative TM domain	334	353	in -> out

Report for 2840.m00171

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)