Report for 2876.m00139

 > 2876.m00139, length: 1737, copies: 1 

MSGVGEMIVSSVARRVASKLGDLAVEEATLLWRFKDDVNDMKEKMRDLVAVMQDADDKVRQVGKDGAVARRWLSK

VKSVAYDVEDVLDEFDAAQLIRNHQSKLKLYFSWNNPLLQKMTIARNMKNLRDKIVAIEKDGKMLNLVRHEPHAK

GSRSNETFTVSDDMEIGMLGRDAETEKIISLLLKTEAKEDISIIPIVGLGGLGKTTLAQAVFADKRVRVFDMKIW

VYVSEDFDLLKIGKAIIRGANRSISLDNCNLQFVQDNLIKELANRRYLIGLDDLWEEYGENLEKLKQMLQHGGKG

SKIIVTTRNGSVVQVLHTGCLANQRKICPVHEADHINLDVLSPDDCWKVMKQRIFGPDDDQSGLEEIGRQIAGRC

GGLPLVANALGQVMSEQRTVEAWRDIRDRKIVLDFIVDNRRDTLERVLLSYYYMKPNYKMCFTCLASFSKGFVVD

SDRLILQWSALGYIQARHTGQSCIDYLLGMSFLQISKSSSVSPVHAKAPRKLTMHDLVYDLAKIIAADEVLVMDA

NKPTTWDKANEHYCRHAQLVNYHKRTEIFKHIPCKIRTLCFRECPEMQLPRKAFSQTSYIRILDLSGLSNEEQST

PSNPVLPSSIRRLMLLGYLDVSGFPIISLPKSFHTLQNMQSLILSNCSLEILPANIGSLQKLCYLDLSRNSNLNK

LPSSVTDLVELYFLNLSGCAKLEELPESINNLKCLQHLDISGCCALQKLPGKFGSLAKLSFVNLSSCSKLTKLPD

SLNLESLEHLILSDCHELEQLPEDLGNLYRLEVLDMSDCYRVQVLPKTFCQLKHLKYLNLSDCHGLIQLPECFGD

LSELQSLNLTSCSKLQSLPWSLCNMFNLKHLNLSYCVSLESLPSSLGDLRLQVLDLTGCYNMHGLPDSISNMSSL

TLLNTATGSECVFHKTQIIKKHLNLPGTVEHDVHEIENADFSSIVELGRLRCRELEVRHLENVERLEDARKANLR

DMVELRWLKFSWELGGTRSVDKDKLVLENLIPPRTLEEFLLDGYMCKDFPSWLTGISSYLPYLMCIRICNLATCD

SLPAFGQLPNLRHFRMNNMPSIRRIGKEFYGEEGNCKKLRVIWLERMTNLEEWWTTRSGKEDEEFLIPNLHVLKV

DNCPKLSFLPYPPRSMNWYLDSSDEVLPERGFRSLVSSTLPFRVVIGNCHFSPDRWGRLATLEIFELAPALRILE

LGFWEDLEMLPEWLGQHVSLEYITIINCPKLTSLPKSLLNLTALRELRLKGCEGLETLPEWLRLLRTAKVLSLSC

AISSVLLHAKTRQSVGILLRTENINKRGKTKKSSTCMSIPVISEYAAILSEFEQAFALGRFENQQILVLNGLAIF

PFDYLQASPSPAIQALVAPITKDTKTGLHTLSISNKNYLLDLSGQLLWSPCSPSHPTVPCSSGECAAASGAHKSC

NNGGRACTARPTNPVTGERAVGDLTLADIVANATDGKTLTSEVTVRGVVSSCAPGSLLRSLPAMAAGDAGLGRGG

VSLPTQLYSKLSLKRQFAVCLPSTAAAPGVAFFGGGPYNLMPPTLFDASTVLSYTDLARSPTNPSAYSIKLRGIA

MNQEAVHLPPGALSRGGGVTLDTAAPYTVLRRDVYRPFVAAFAKATARITRMPSVAPFELCFNSSALGFTRVGYA

VAPIDLVTSGGRNWTVFGSNSLAQVAGDTACLAFVDGGRAARSAVTVGAFQMENNFLLFDEAASRLGFSGTLFFI

RTTCGNFNFARN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	149	312	3.6e-26
NB-ARC [Pfam ls]	149	469	1.5e-36
NB-ARC [Pfam fs]	341	469	3.4e-11
LRR [Pfam ls]	638	660	1.1
LRR [Pfam ls]	661	684	5.1
LRR [Pfam ls]	685	708	0.26
LRR [Pfam ls]	709	732	0.12
LRR [Pfam ls]	756	779	0.25
LRR [Pfam ls]	780	803	0.38
LRR [Pfam ls]	804	827	0.24
LRR [Pfam ls]	828	851	2
LRR [Pfam ls]	852	872	0.74
LRR [Pfam ls]	875	898	0.55
LRR [Pfam ls]	1243	1266	3.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	638	660	0.056
LRR [sensitive, ls]	638	660	1.1
LRR [sensitive, ls]	661	684	0.26
LRR [sensitive, ls]	661	684	5.1
LRR [sensitive, ls]	685	708	0.013
LRR [sensitive, ls]	685	708	0.26
LRR [sensitive, ls]	709	732	0.0063
LRR [sensitive, ls]	709	732	0.12
LRR [sensitive, ls]	733	753	0.68
LRR [sensitive, ls]	733	753	13
LRR [sensitive, ls]	756	779	0.013
LRR [sensitive, ls]	756	779	0.25
LRR [sensitive, ls]	780	803	0.019
LRR [sensitive, ls]	780	803	0.38
LRR [sensitive, ls]	804	827	0.012
LRR [sensitive, ls]	804	827	0.24
LRR [sensitive, ls]	828	851	0.1
LRR [sensitive, ls]	828	851	2
LRR [sensitive, ls]	852	872	0.038
LRR [sensitive, ls]	852	872	0.74
LRR [sensitive, ls]	875	898	0.028
LRR [sensitive, ls]	875	898	0.55
LRR [sensitive, ls]	1119	1142	3.4
LRR [sensitive, ls]	1119	1142	67
LRR [sensitive, ls]	1219	1242	0.51
LRR [sensitive, ls]	1219	1242	10
LRR [sensitive, ls]	1243	1266	0.19
LRR [sensitive, ls]	1243	1266	3.7

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	4	1282	2e-57
Mla1 [Hordeum vulgare].	8	810	3e-42
RPS2 [A. thaliana]	38	891	3e-37
RPM1 [A. thaliana]	43	858	5e-43
Pi-ta [Oryza sativa]	67	642	1e-19
M [L. usitatissimum]	96	793	2e-12
Pib [Oryza sativa].	149	672	2e-25
RPP5 [A. thaliana]	154	1135	1e-26
N [N. glutinosa]	168	900	3e-33
Xa1 [Oryza sativa]	170	904	8e-43
RPP5 [A. thaliana]	551	906	2e-26
FLS2 [A.thaliana]	578	904	3e-19
Xa21 [O. sativa]	606	854	6e-11
RPP5 [A. thaliana]	612	1259	3e-14
FLS2 [A.thaliana]	613	906	7e-19
FLS2 [A.thaliana]	618	956	4e-13
RPP5 [A. thaliana]	626	818	1e-17
FLS2 [A.thaliana]	628	904	4e-12
RPP5 [A. thaliana]	629	873	1e-20
Xa21 [O. sativa]	638	876	4e-11
FLS2 [A.thaliana]	651	903	9e-13
Xa21 [O. sativa]	652	860	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	35	55

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2876.m00139

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)