Report for 2889.m00167

 > 2889.m00167, length: 854, copies: 1 

MSSMNALLVTLTNMDGLSDQQKEWRNKDAIEHRDRYKLSESVPTATPTHVVAIDPQHLALNEEEDGLVGIEGPKQ

KIIRMLMDEEEGSRKLKVISIVGSAGIGKTTLAKQVYLEIKGRFDCSAFVSLSQNPSMNKIFTHILSQVGFKTRR

PLHREYDLIDELKQYLRGMRYLIVINNIWSESVWDTICLAFALRKCGSRVIITTCIEDLGSVCRPNFYGHIYKVE

PLNDFDSRMLFFRRVFSNEDACPDHLRKVSEEILRMCGGVPLAITSVASILAGQGDMMIEKWERILSSRGYELET

DPTIGWMRHVLSFSYSNLCPELRTCLLYLSTFPEYCSIRKDDLIRQWIAEGLVKEKFGCDQYEIAEIYFNNLIKR

SIINPVDIDDCGMVMSCRVHDLMIDLIISKAIEENFIAILDDQHTMRGSHEARRFTLHFNRDLENTEQNLVLTRS

VHHQTRSISFLGPIQCMLVISEFKYLRLLQIEVYYSNIDSYDLTHMCEFFQLRYFRIRGILCKLPEKIGGLKYLE

TFDIDDNVKNIPSDVCKLSSMAHLTLPKHAKIPSGIDKLVALRTLKVSTSYDTSIEFYEGFGSLRKLRELELGAT

NYMSRDKVVSLAASLMKLGSCSLRSLILRNGDLSLEAGDRLNFWSPPPLHLRRLHVFEVVFSYVPDWIAKLDKLT

SMVIRIREISKDGFGVLARLPCLLFLRLSVHRVKEEDATIVVCSRTFQHLKEFWFRYKVPCLVFEPLAMPRLQIL

NIQFDEECLYGRDDGVPCEPAGIEHLTNLMQISAHIHLAHHWMWQTPALPRRKVKHFSERHDEDGHGQVEEEAPV

YKKAAEAMLTRATSKHPGIHYVNIQFIQM

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	52	358	7.3e-47
NB-ARC [Pfam ls]	52	358	1.8e-46

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	746	6e-92
Pib [Oryza sativa].	38	786	2e-47
I2 [L. esculentum]	62	730	3e-37
RPM1 [A. thaliana]	64	806	3e-43
RPS2 [A. thaliana]	67	551	6e-18
Pi-ta [Oryza sativa]	67	592	3e-83
Xa1 [Oryza sativa]	88	549	7e-26
Pi-ta [Oryza sativa]	649	786	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2889.m00167

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)