Report for 2896.m00105

 > 2896.m00105, length: 626, copies: 1 

MEFVASIVDAVFRPLKDYFARTFGYVMSCGDYIDLLGHEMDELKSKRDDVKRLVDVAERRGMEATSQVKWWLECV

SRLEDAAARIEEEYQARLRLPPEQAPGLRATYHLSQRADEMFAEAANLKEKGAFHKVADELVQVRFEEMPSAAVV

GMDAVLQRLHACVRHGDVGIVGIYGMAGVGKTALLNKYNNDFLINSPDINVAINIEVGKEFSLDDIQKIIGDRLG

VSWENRTPRERAGMLYRVLTKMNFVLLLDDLWEPLNFQMIGIPVPKHNSKSKIVLTTRIEDVCDRMDVRRKLKME

CLPWEPAWELFREKVGEHLMFSSIEIQEQAKALAMKCGGLPLALITVGRAMASKRTEKEWKHAITVLKVAPWQLL

GMEMDVLMPLKNSYDSLPSDKLRLCLLYCSLFPEEFSISKEWIIGYCIGEGFIDDLYTDMDEIYNKGHDLLGVLK

IACLLEKGDDEDHISMHPMVRAMALWIASDFGTKETKWLVRAGVGLKEAPGAEKWSDAERISFMRNNILELYERP

NCPLLKTLMLQVNPALDKICDGFFQFMPSLRVLDLSHTSIHELPSGISSLVELQYLDLYNTNIKSLPRELGALVT

LRFLLLSHMPLDLIPGGVISSLTMLQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	133	433	1.2e-62
NB-ARC [Pfam fs]	152	428	3.8e-63
LRR [Pfam ls]	554	576	0.022
LRR [Pfam ls]	577	599	0.021
LRR [Pfam ls]	600	623	4.6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	529	553	5.2
LRR [sensitive, ls]	529	553	100
LRR [sensitive, ls]	554	576	0.0011
LRR [sensitive, ls]	554	576	0.022
LRR [sensitive, ls]	577	599	0.0011
LRR [sensitive, ls]	577	599	0.021
LRR [sensitive, ls]	600	623	0.24
LRR [sensitive, ls]	600	623	4.6

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	1	626	1e-109
Xa1 [Oryza sativa]	144	604	8e-25
Pib [Oryza sativa].	149	427	1e-16
Pi-ta [Oryza sativa]	149	446	1e-13
I2 [L. esculentum]	170	607	2e-25
RPM1 [A. thaliana]	170	605	6e-20
Mla1 [Hordeum vulgare].	171	608	1e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	38	60

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2896.m00105

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)