Report for 2942.m00118

 > 2942.m00118, length: 759, copies: 1 

MAAAALPRLLLAAAVLCAAFAPVSGFTDPSDALGLWELYRTLDSPWQLSGWTSQGGDPCGRGGEQRPWHGVLCRD

SSIVALNISGLGVGGWLGLELLKFYSLKILPVFNFFASLNHDDRRDVSFNNIAGEIPRNLPPSVEYLNFAANQFE

GSIPPSLPWLHTLKYLNLSHNKLSGIIGDVFVNMESLGTMDLSFNSFSGDLPTSFSSLKNLHHLYLQHNEFTGSV

ILLADLPLSSLNIENNSFSGYVPGTFESIPELRIDGNQFQPGFKRASPSFTRSAHSPPTPHPPPSSPPPPMSPPP

PAVKENLKHKPEPLKPSLSHSSMYNHNQHRKSHSRVTAAAIATVTGTAFVLLIVGLVLKSCTYSPKSTANNAKSP

PANVEKVPKANEVLYSWNSLMNDCEASSSDVIKPERAMKTKVWAKTSKNFLTAKQFQAVDILAATRNFSKECFIG

EGFTGQVYRGDFPGGQLLAIKKINMVDLSLSEQDELIDMLGKMSNLKHPNISALVGYCVEFGHCALLYEYAENGS

LDDILFSAATRSRALSWKARMKIALGVAYALEFMHSTCSPPVVHGNIKATNILLDAQLMPYLSHCGLARLSQFVS

AIRTDSEALNSGKGYVAPELTDPATDSIKADIYSFGVILLVLLTGQKAFDSSRRQNEQFLVDWASPHLHNLDSLE

RITDPRIHASMPPQAISTLGNIILLCIKKSPELRPPMTVITDKLLKLVQSTGLQKTSTTTQHLEVDAQEPSFKTT

RPYFEPSFT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam fs]	162	185	4.1e-05
LRR [Pfam ls]	162	185	0.00067
LRR [Pfam ls]	186	209	2.7
LRR [Pfam ls]	210	232	0.2
Ser/Thr pkinase [Pfam fs]	443	720	6.7e-27
Ser/Thr pkinase [Pfam ls]	443	720	7.9e-27

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	138	158	0.44
LRR [sensitive, ls]	138	158	9.2
LRR [sensitive, ls]	162	185	3.2e-05
LRR [sensitive, ls]	162	185	0.00067
LRR [sensitive, ls]	186	209	0.13
LRR [sensitive, ls]	186	209	2.7
LRR [sensitive, ls]	210	232	0.0096
LRR [sensitive, ls]	210	232	0.2

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	48	248	1e-10
Xa21 [O. sativa]	104	263	7e-15
CLV2 [A. thaliana]	121	259	2e-11
CLV2 [A. thaliana]	121	248	7e-11
FLS2 [A.thaliana]	121	264	3e-14
Xa21 [O. sativa]	121	262	5e-12
FLS2 [A.thaliana]	122	249	2e-13
FLS2 [A.thaliana]	123	722	9e-43
Pto [L. esculentum]	422	731	1e-35
Rpg1 [Hordeum vulgare]	440	719	5e-26
Rpg1 [Hordeum vulgare]	440	649	4e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	27	in -> out
putative TM domain	78	100	out -> in
putative TM domain	336	358	in -> out

Report for 2942.m00118

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)