Report for 2948.m00060

 > 2948.m00060, length: 284, copies: 2 

MTHQILVLIQDELGCLGLAGGNNFEGQISPDICNLQFLRIIDFSHNKLSGSVLACIGSILFNNVEDGDDRIFLNR

FRLADIEMHDSDLSTTYYDLGFAFSTKWYQYAYGFNFVTMMSGIDLSANMLDGEIPWQLGNLSHIKSLNLSYNFF

TGQIPATFANMKEIESLDLSHNNLSGPIPWQLTQLSTLGAFSVAYNNLSGCIPNYGQLASFSMERYVGNNNLYNT

SQGSRCSPSGHVSKEEDVEERYDDPVLYIVSAASFVLAFCATVAFSFCHSYGRSVILKM

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	139	162	0.046
LRR [Pfam ls]	163	186	0.29

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	37	65	1.4
LRR [sensitive, ls]	37	65	29
LRR [sensitive, ls]	115	138	5.2
LRR [sensitive, ls]	115	138	110
LRR [sensitive, ls]	139	162	0.0023
LRR [sensitive, ls]	139	162	0.046
LRR [sensitive, ls]	163	186	0.014
LRR [sensitive, ls]	163	186	0.29

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	10	200	1e-13
FLS2 [A.thaliana]	18	204	1e-10
FLS2 [A.thaliana]	19	219	9e-13
Xa21 [O. sativa]	20	220	7e-12
Cf-9 [L. pimpinellifolium]	21	252	9e-23
FLS2 [A.thaliana]	21	273	1e-18
CLV2 [A. thaliana]	22	283	9e-19
CLV2 [A. thaliana]	22	225	8e-14
FLS2 [A.thaliana]	22	222	3e-14
FLS2 [A.thaliana]	22	220	6e-12
Xa21 [O. sativa]	22	203	1e-14
FLS2 [A.thaliana]	25	203	5e-12
FLS2 [A.thaliana]	113	220	5e-12
Xa21 [O. sativa]	113	220	3e-13
Xa21 [O. sativa]	121	204	2e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	251	273	out -> in

Report for 2948.m00060

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)