Report for 2948.m00062

 > 2948.m00062, length: 1570, copies: 1 

LVGLKKLQYLDFTYCSLEGSFPVFNGEFGALEVLVLNHNHLNRGLSAQAFQNLQNLRQLNLSLNHFGGELPTWLF

ELPHLKILDLSNNLFEGSIPTSSSLKPFALEILDLSHNHLSGELPTAVLKNIRSLNLRGNQFQGSLPASLFALPQ

LKFLDLSQNSFDGHIPTRTSSEPLLLEVLNLQNNRMSGSLCLWSERAFGNLQNLRELYLSSNQFSGSLPTFLFSL

PHIELLDLSANLLEGPIPISISSNLSLSLKNIRFSQNNLSGTFPFIWLRNLTKLEEIDFSGNPNLAVDINFPGWI

PPFQLKRLVLSSCELDKSTLSEPYFLHTQHHLKVLDLSDNHLTGNMPNWLFTKETALVRLNLGNNLLTGSFAPVS

NNELSGLIFDGVNNLSIISQLYLDNNKFEGTIPHNLSGQLKIIDLHGNRLSGKLDASFWNLSSLRALNLADNHIT

GEIHPQICKLTGIVLLDLSNNNLTGSIPDFSCTSELRFLNLSRNYLSGNLSESYFNTSNLIALDITYNQFTGNLN

WVGYLGNTRLLSLAGNNFEGQITPNLCKLQYLRIIDFSHNKLSGSLPACIGGLSLIGRANDQTLQPIFETISDFY

DTRYSLRGFNFATKGHLYTYGGNFFISMSGIDLSANMLDGEIPWQLGNLSHIRSLNLSYNFFTGQIPATFASMNE

IESLDLSHNNLSGPIPWQLTQLASLGAFSVAYNNLSGCIPNYGQLSSFSIDSYLGNDNLHKISQGKRCSPSPGAV

AKEDVGERVDPFSAYRVCITMQSYTQKGDVEVVCDGKEWDIVVDGDKFNLIALTDEIKEHFEWGTNQKASMLYLD

STGQYLPLTSDAALRSLVDSNFLFREISVLVRVEDIVEVADADGNGNANCNGGDGPGGDGSGGDGSGADVNGGDG

NDGDGNVVVGEKEMQQKASSKWQAMFWDDTPISNPEYPEDEPIGVNEEHLYGVVDLQSQKKGTSGKKTDKEGSSG

NEVATQDVPNDFDPQHVPEEEVPVDEIGIAVPLFVHNRENPTFVVDATFPNGEAFKLAMRQFAIKGEFEVNVSHS

SKARYIAKCAKTKDCTWRIYARKETKSSVWKISRLSEIHTCATTSKLSGKMASSGWIADRAKDIMTTEPNIGPKA

LQDRLEKKYNVTLRSGRTWEGLQKAKDDIHGSWEASFQLLWSFKAEIERSMPGSIVDINVNAMGEKWHMQFLTRK

NYENWEWFMQRLKQAVVEYRECFRHLMLNFSKKFRGEVFDSNMWPAAWTFSLYKYQEYMDQIKEACPAAYEYLEV

HHPHTWTRSKFSEACKIEYVCNNLAESFNAWISDIKGLPIIDLVNKLKQMIMKQMSRRKIVAEGLIGKILPSVVR

ALNAKSRGLNYEIARSGLTDAEVTVFDMKTKKHNTYGVFLEKGASLEDYVGEFFSVDRFKLAYASSIVPMSDKTQ

WPKVDIGFKMLPPKLGRSARRPQKNRVPNSAEGKGKGKRKRCSRCQGFGHQARTCKEPEWVDPSDLASAPAPPKR

KKRKTKPTVVVVSKPQTRSKSKCDASSSSQPLPTSPSHPAGVVSTSQPPTRTTPPRLAKTKARTAGVRPK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	30	54	0.45
LRR [Pfam ls]	55	78	5.3
LRR [Pfam ls]	79	101	0.19
LRR [Pfam ls]	104	125	0.6
LRR [Pfam ls]	126	149	0.031
LRR [Pfam ls]	203	226	0.028
LRR [Pfam ls]	227	251	7.2
LRR [Pfam ls]	253	277	2.6
LRR [Pfam ls]	331	355	0.094
LRR [Pfam ls]	356	378	7.1
LRR [Pfam ls]	414	437	0.088
LRR [Pfam ls]	438	461	0.062
LRR [Pfam ls]	462	484	0.038
LRR [Pfam ls]	485	509	1.9
LRR [Pfam ls]	532	555	5
LRR [Pfam ls]	556	579	0.48
LRR [Pfam ls]	651	674	0.1
LRR [Pfam ls]	675	695	0.56

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	6	28	0.74
LRR [sensitive, ls]	6	28	15
LRR [sensitive, ls]	30	54	0.022
LRR [sensitive, ls]	30	54	0.45
LRR [sensitive, ls]	55	78	0.26
LRR [sensitive, ls]	55	78	5.3
LRR [sensitive, ls]	79	101	0.0096
LRR [sensitive, ls]	79	101	0.19
LRR [sensitive, ls]	104	125	0.03
LRR [sensitive, ls]	104	125	0.6
LRR [sensitive, ls]	126	149	0.0016
LRR [sensitive, ls]	126	149	0.031
LRR [sensitive, ls]	150	173	1.1
LRR [sensitive, ls]	150	173	22
LRR [sensitive, ls]	175	199	4.3
LRR [sensitive, ls]	175	199	87
LRR [sensitive, ls]	203	226	0.0014
LRR [sensitive, ls]	203	226	0.028
LRR [sensitive, ls]	227	251	0.36
LRR [sensitive, ls]	227	251	7.2
LRR [sensitive, ls]	253	277	0.13
LRR [sensitive, ls]	253	277	2.6
LRR [sensitive, ls]	278	300	3
LRR [sensitive, ls]	278	300	60
LRR [sensitive, ls]	304	329	2.2
LRR [sensitive, ls]	304	329	43
LRR [sensitive, ls]	331	355	0.0047
LRR [sensitive, ls]	331	355	0.094
LRR [sensitive, ls]	356	378	0.35
LRR [sensitive, ls]	356	378	7.1
LRR [sensitive, ls]	392	412	1.6
LRR [sensitive, ls]	392	412	33
LRR [sensitive, ls]	414	437	0.0044
LRR [sensitive, ls]	414	437	0.088
LRR [sensitive, ls]	438	461	0.0031
LRR [sensitive, ls]	438	461	0.062
LRR [sensitive, ls]	462	484	0.0019
LRR [sensitive, ls]	462	484	0.038
LRR [sensitive, ls]	485	509	0.096
LRR [sensitive, ls]	485	509	1.9
LRR [sensitive, ls]	532	555	0.25
LRR [sensitive, ls]	532	555	5
LRR [sensitive, ls]	556	579	0.024
LRR [sensitive, ls]	556	579	0.48
LRR [sensitive, ls]	627	650	1.5
LRR [sensitive, ls]	627	650	31
LRR [sensitive, ls]	651	674	0.005
LRR [sensitive, ls]	651	674	0.1
LRR [sensitive, ls]	675	695	0.028
LRR [sensitive, ls]	675	695	0.56
MuDR family transposase [ls]	994	1151	4e-11
MuDR family transposase [fs]	1019	1151	2.1e-14

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	1	478	3e-25
FLS2 [A.thaliana]	1	499	1e-46
CLV2 [A. thaliana]	4	552	2e-38
FLS2 [A.thaliana]	4	547	6e-49
Xa21 [O. sativa]	4	479	2e-30
FLS2 [A.thaliana]	17	734	2e-67
CLV2 [A. thaliana]	27	569	4e-44
Xa21 [O. sativa]	44	550	4e-43
Cf-9 [L. pimpinellifolium]	53	743	2e-75
Xa21 [O. sativa]	58	572	1e-37
Xa21 [O. sativa]	102	734	2e-44
FLS2 [A.thaliana]	126	731	6e-47
CLV2 [A. thaliana]	127	787	6e-54
Cf-9 [L. pimpinellifolium]	129	723	2e-37
Xa21 [O. sativa]	226	715	2e-36
Xa21 [O. sativa]	376	733	5e-36
FLS2 [A.thaliana]	412	715	1e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
MuDR family transposase	994	1151	3.3e-11
Zinc knuckle	1465	1482	0.0028

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2948.m00062

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)