Report for 2952.m00054

 > 2952.m00054, length: 669, copies: 1 

MLPPPAAAAAALLLLLALSAGANDIASDAAALQAFIAPFGSATVSWNTSQPTCSWTGVVCSGGRVVEVHLPGVGL

RGNVPVGALGGLDKLAVLSLRYNALSGPLPSDLAKCAELRVINLQSNHFSGELPPEILALPALTQLNLAENRFSG

RIPASIAKNGRLQLLYLDGNLLTGELPNVNMPLLTSFNVSFNNLTGGIPSGLSGMPATSFLGMSLCGKPLAACRT

PISIPPSQAPALSPEGAVSAVGRGRGGRRLAGGAIAGIVIGCALGFLLVAGVLVLACGALQRKPRPHHSRDVAAE

LALHSKEAMSPSVYTPRVSDARPPPPPAAVVPAIQPAVAANVAGKKKLFFFGRVPRPYDLEDLLRASAEVLGKGT

YGTTYKAALETGPVVAVKRLKETSLPEREFRDKVAAIGGLDHPNVVPLQAYYFSKDEKLMVYEFVAMGSLSSMLH

GNRGSGRSPLLWESRRRIALASARGLEYIHATGSKVVHGNIKSSNVLLSRSSVDARVADHGLAHLVGPAGAPSSR

VAGYRAPEVVADPWRLSQKADVYSFGVLLLELLTGKAPTHAVLHDDEGVDLPRWARSVVREEWTSEVFDTELLRH

PGAEDEMVEMLRLAMDCTVTVPDQRPAMPEIVVRIEQLGGAGSARTARSVSMDDADDRPLRPAGSTRES

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	89	112	8.5
LRR [Pfam ls]	113	136	0.26
LRR [Pfam ls]	161	182	0.63
LRR [Pfam ls]	183	206	0.38
Ser/Thr pkinase [Pfam fs]	365	565	2.5e-33
Ser/Thr pkinase [Pfam ls]	365	638	1.2e-29

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	89	112	0.42
LRR [sensitive, ls]	89	112	8.5
LRR [sensitive, ls]	113	136	0.013
LRR [sensitive, ls]	113	136	0.26
LRR [sensitive, ls]	137	160	0.83
LRR [sensitive, ls]	137	160	17
LRR [sensitive, ls]	161	182	0.031
LRR [sensitive, ls]	161	182	0.63
LRR [sensitive, ls]	183	206	0.019
LRR [sensitive, ls]	183	206	0.38

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	10	207	3e-20
FLS2 [A.thaliana]	15	214	8e-12
FLS2 [A.thaliana]	53	205	8e-12
Xa21 [O. sativa]	53	199	2e-11
Xa21 [O. sativa]	64	200	6e-11
FLS2 [A.thaliana]	65	214	4e-12
Xa21 [O. sativa]	67	209	2e-11
FLS2 [A.thaliana]	68	233	3e-13
FLS2 [A.thaliana]	70	220	8e-12
FLS2 [A.thaliana]	72	198	4e-11
CLV2 [A. thaliana]	75	202	2e-12
FLS2 [A.thaliana]	75	649	6e-38
FLS2 [A.thaliana]	75	202	1e-12
FLS2 [A.thaliana]	75	208	4e-12
FLS2 [A.thaliana]	75	214	1e-11
Xa21 [O. sativa]	75	450	3e-16
FLS2 [A.thaliana]	84	202	3e-14
Cf-9 [L. pimpinellifolium]	85	213	1e-12
CLV2 [A. thaliana]	88	214	3e-12
CLV2 [A. thaliana]	90	214	5e-11
Pto [L. esculentum]	358	636	4e-26
Rpg1 [Hordeum vulgare]	366	638	1e-12
Rpg1 [Hordeum vulgare]	370	639	8e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	27	out -> in
putative TM domain	258	280	in -> out

Report for 2952.m00054

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)