Report for 2958.m00027

 > 2958.m00027, length: 830, copies: 1 

MALSVLLLLLAAVAQAQKAPTATTDRIEAEALKAVFEKLDQKAEWNTTGDPCSGAATDSTDINDSSINPAIKCDC

SDQNNTVCHITGLNLSHNFLVGTIPSFIGELAAMQYIKSHILSLEHTRTFGINALSGSIPKELGNLTNLVSLGFS

SNNFSGSLPSELGSLFKLEELYIDSAGLSGELPSSLSKLTRMKILWASDNNFTGQIPDYIGSWNLTDLRFQGNSF

QGPLPANLSNLVQLTNLILRNCMISDSLALIDFSKFASLTLLDFSYNQLSGNFPFWVSEEDLQFALPSGLECLQQ

NTPCFLGSPHSASFAVDCGSTRFISGSRNSSYQADATNLGAASYHVTEPLTWEFGFEDTESWKSRGRRVFDIYVQ

GERKEKDFDIKKEAGGKSYTAVKKDYIVSVTKNFVEIHLFWAGKGTCCIPTQGYYGPTISALSLSPSLVALVGIF

LWRKKRRKLSLEQQELYSIVGRPNIFSYGELRSATENFSSSNRLGEGGYGAVYKGKLMDGRIVAVKQLSQTSHQG

KKQFATEIETISRVQHRNLVKLYGCCLEGNNPLLVYEYMENGSLDKALFGTEKLHIGWPARFEICLGIARGLAYL

HEESSIRVVHRDIKASNVLLDANLNPKISDFGLAKLYDDKMTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG

VVLLETLAGRPNYDDELEEDKIYIFEWVWRLYESERALDIVDPNLTEFNSEEVLRAIHVALLCTQGSPHRRPSMS

RVVAMLTGDAEVGEVAAKPSYITEWQIKGGGTTTTTTTGSSSTSSSAANRQWSSAPPPPRATSSPKMSSPFLSSV

VDEGR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	84	107	1.5
LRR [Pfam ls]	143	166	2.5
LRR [Pfam ls]	167	190	1.2
LRR [Pfam ls]	214	237	4.5
Ser/Thr pkinase [Pfam fs]	488	693	1.2e-59
Ser/Thr pkinase [Pfam ls]	488	758	4.2e-57

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	84	107	0.075
LRR [sensitive, ls]	84	107	1.5
LRR [sensitive, ls]	143	166	0.13
LRR [sensitive, ls]	143	166	2.5
LRR [sensitive, ls]	167	190	0.06
LRR [sensitive, ls]	167	190	1.2
LRR [sensitive, ls]	214	237	0.23
LRR [sensitive, ls]	214	237	4.5
LRR [sensitive, ls]	238	262	0.73
LRR [sensitive, ls]	238	262	15
LRR [sensitive, ls]	263	284	0.52
LRR [sensitive, ls]	263	284	10

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	32	224	1e-13
CLV2 [A. thaliana]	46	308	2e-12
FLS2 [A.thaliana]	77	307	3e-17
FLS2 [A.thaliana]	80	279	3e-19
FLS2 [A.thaliana]	81	289	2e-21
FLS2 [A.thaliana]	84	310	5e-16
CLV2 [A. thaliana]	85	231	5e-17
FLS2 [A.thaliana]	85	279	1e-21
Xa21 [O. sativa]	85	331	5e-17
CLV2 [A. thaliana]	88	279	4e-16
CLV2 [A. thaliana]	88	277	4e-16
FLS2 [A.thaliana]	88	279	4e-19
FLS2 [A.thaliana]	88	279	2e-14
Xa21 [O. sativa]	88	244	4e-18
Xa21 [O. sativa]	88	232	2e-17
CLV2 [A. thaliana]	101	279	7e-11
Cf-9 [L. pimpinellifolium]	114	286	2e-11
CLV2 [A. thaliana]	126	300	1e-11
Xa21 [O. sativa]	132	570	4e-33
FLS2 [A.thaliana]	443	756	2e-39
Pto [L. esculentum]	476	753	9e-58
Rpg1 [Hordeum vulgare]	476	769	5e-37
Rpg1 [Hordeum vulgare]	476	753	4e-34

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2958.m00027

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)