Report for 2958.m00028

 > 2958.m00028, length: 935, copies: 1 

MRRFIRSRVRRQIHLHGSVLLIILLLLAAAVAQAQQAPTTRTDPTEAAALNAVFAKLGQKAQPSWNITGDPCTGR

ATDGSSTEDDSFNPAITCDCTDQNGTVCHITKLKIYAMDASGPIPEELRNLTRLTNLNFGINALSGSIPKEFGNL

TNLISLGLGSNNFSGPLPSELGNLDKLTELYIDSAGLSGELPSSFSKLTKVEKLWASDNNFTGKIPDYIGSWNLT

DLRIGDIENGSSSLAFISNMTSLSILVLRNCKISDNLASIDFSKFASLKLLDLSFNNITGQVPEAMLGLNSLNFL

DFSYNQLSGNFPSWANEKNLQLNLVANNFVLDNSNNSVLPSGLECLQRNTPCFLGSPHSASFAVNCGSNRSISGS

DNYVYQADGVSLGAAQYYVTGETKWGVSSVGKFMDAPSNGIYIFNSSRQFQSTLDPELFQTARLSPSSLRYYGIG

LENGNYTVTLQFAEIEFEDTKSWKSLGRRVFDIYIQGERKERNFDIRKATGGKSYTAVKKQYLIPVTKNFVEIHL

FWAGKGTCCIPAQGYYGPSISALSLKPNFIPTVRSAAAQRKSSSKTGVIVGVVVGVAVFGLVALAAIFLWMQKRR

KLSLEQQELYCIVGRPNVFSYGQLRVS



LMEG



WQ



NSYLRHLIKGNNNLRLKLKLYLECNTVIL



SCMVAALKANIHCWFMSTWRMEALIKHYLELRN



TLTGQHVLRYA



ALQEVWLIFMKSPASVLFTGTSRPVMSYLMPISILRSQISGWPNFMMTRKRMSARKLLVHLVILHLSMP



EAV



LRKLMSSHLAWSYWRF



LADQTMMMRLKKTRFIFSNGPGICTRTTTLWAS



TQSSRSSTGRRCSVPSASPSSAPRARLTSGRQCRGS



RCSPATSRRRRW



RSRATSRSGSSRAATPATWTAKSAGSRARRREDRPRRGPRRRS



APST

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	128	151	0.59
LRR [Pfam ls]	176	199	0.55
LRR [Pfam ls]	272	295	0.14
LRR [Pfam ls]	296	318	8.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	128	151	0.029
LRR [sensitive, ls]	128	151	0.59
LRR [sensitive, ls]	152	175	0.85
LRR [sensitive, ls]	152	175	17
LRR [sensitive, ls]	176	199	0.027
LRR [sensitive, ls]	176	199	0.55
LRR [sensitive, ls]	200	223	0.68
LRR [sensitive, ls]	200	223	14
LRR [sensitive, ls]	247	271	1
LRR [sensitive, ls]	247	271	20
LRR [sensitive, ls]	272	295	0.0068
LRR [sensitive, ls]	272	295	0.14
LRR [sensitive, ls]	296	318	0.44
LRR [sensitive, ls]	296	318	8.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	84	329	7e-21
Cf-9 [L. pimpinellifolium]	86	323	2e-18
FLS2 [A.thaliana]	91	358	7e-18
FLS2 [A.thaliana]	94	328	5e-21
Cf-9 [L. pimpinellifolium]	95	358	7e-12
CLV2 [A. thaliana]	95	337	2e-16
FLS2 [A.thaliana]	100	346	4e-25
Xa21 [O. sativa]	100	312	5e-24
Xa21 [O. sativa]	100	313	1e-18
Xa21 [O. sativa]	100	355	2e-18
FLS2 [A.thaliana]	102	343	2e-20
Xa21 [O. sativa]	102	330	6e-16
Cf-9 [L. pimpinellifolium]	104	309	5e-18
FLS2 [A.thaliana]	104	331	8e-22
Cf-9 [L. pimpinellifolium]	105	356	8e-17
FLS2 [A.thaliana]	105	340	2e-17
Xa21 [O. sativa]	105	344	9e-20
CLV2 [A. thaliana]	108	343	7e-18
CLV2 [A. thaliana]	116	355	1e-16
CLV2 [A. thaliana]	116	302	8e-14
Xa21 [O. sativa]	123	396	3e-19
CLV2 [A. thaliana]	129	338	1e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	13	32	in -> out
putative TM domain	573	595	out -> in
putative TM domain	659	681	in -> out

Report for 2958.m00028

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)