Report for 2960.m00121

 > 2960.m00121, length: 711, copies: 1 

MRHRLRLLLVVLVAAAYAAGDAASSHSQPTLPAVPPVQAVRPPPAAVGGGSHSQPTFPPRAPVRAVPPPATLVST

ATPGALLAAFLAKADPSAHLRFPLAVSPCSHPAVSCSADGQITRLVLESSGLNGTFAPATLSRLIELRVLSLKSN

ALHGPIPDLSPLENLKALFLAGNRFSGPFPASVASLRRLRSIDLAGNRLSGALPPGIEVAFPHLTFLRLDANHFN

GSLPAWNQSSLKLLNVSYNNFSGPVPVTPVMAQMGAAAFAGNPELCGEVLRRECRGSHLLFFHGPGNNGSAAPPV

QSAAATGDGPQRDDISLPDSSTPRSRKLRRRAAIAVAATAAAFVAVLLLCAMIAMKRGKKRRRPSSAAYPSPKKS

AAMSEVSRDNTDLGYVECVPDEETAAMMMPEEKARRLERSGCLTFCAGEGASYSLEQLMRASAEVLGRGSVGTTY

KAVLDGRLVVIVKRLDAAKIGAAALEAEAFEQNMDAVGRLRHPNLVSLRAFFQAKEERLLVYDYQPNGSLYSLIH

GSRSSRAKPLHWTSCLKIAEDIGQGLAYIHQASRLVHGNIKSSNVLLGSDFEACLTDNCLAFLLESSEVKDDAAY

RAPENMKSNRRLTPKSDIYAFGILLLELISGKPPLQHSVLVATNLQTYVQSARDDEGVDVERLSMIVDIASACVR

SSPESRPTAWQVLKMIQEVKEADTAGDNDSDLTSNS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	141	163	6
LRR [Pfam ls]	164	187	8.9
LRR [Pfam ls]	188	215	0.31
Ser/Thr pkinase [Pfam fs]	435	637	8.6e-29
Ser/Thr pkinase [Pfam ls]	435	693	3.8e-28

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	116	140	3.2
LRR [sensitive, ls]	116	140	64
LRR [sensitive, ls]	141	163	0.3
LRR [sensitive, ls]	141	163	6
LRR [sensitive, ls]	164	187	0.44
LRR [sensitive, ls]	164	187	8.9
LRR [sensitive, ls]	188	215	0.015
LRR [sensitive, ls]	188	215	0.31
LRR [sensitive, ls]	235	257	0.49
LRR [sensitive, ls]	235	257	9.8

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	86	299	3e-11
Xa21 [O. sativa]	116	253	1e-13
Xa21 [O. sativa]	116	251	2e-13
FLS2 [A.thaliana]	120	294	5e-14
Xa21 [O. sativa]	120	538	1e-12
CLV2 [A. thaliana]	122	251	8e-12
FLS2 [A.thaliana]	127	695	7e-29
FLS2 [A.thaliana]	133	251	2e-11
FLS2 [A.thaliana]	133	251	5e-11
Pto [L. esculentum]	424	688	8e-22
Rpg1 [Hordeum vulgare]	430	694	6e-19
Rpg1 [Hordeum vulgare]	436	702	6e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	24	in -> out
putative TM domain	65	87	out -> in
putative TM domain	333	355	in -> out

Report for 2960.m00121

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)