Report for 2971.m00146

 > 2971.m00146, length: 1117, copies: 2 

MSKKERGALFYTHICPLTHVPSGSQILWLGSSTEGNKEKCELVRPMHAAAAVLPVMGAWICNYRGSYWSAKISTS

ESMNRLRLLLCAHDEPPNLSYGVHSFMLTLSSPEFQHPNTASVAQLMVSLVLAMAGKLISSSIVLALLPLFCGIL

LAPSCEAATVDTTSATLLQVKSGFTDPNGVLSGWSPEADVCSWHGVTCLTGEGIVTGLNLSGYGLSGTISPAIAG

LVSVESIDLSSNSLTGAIPPELGTMKSLKTLLLHSNLLTGAIPPELGGLKNLKLLRIGNNPLRGEIPPELGDCSE

LETIGMAYCQLIGAIPHQIGNLKQLQQLALDNNTLTGGLPEQLAGCANLRVLSVADNKLDGVIPSSIGGLSSLQS

LNLANNQFSGVIPPEIGNLSGLTYLNLLGNRLTGGIPEELNRLSQLQVVDLSKNNLSGEISAISASQLKNLKYLV

LSENLLEGTIPEGLCNGDGNGNGNSSLENLFLAGNDLGGSIDALLSCTSLKSIDVSNNSLTGEIPPAIDRLPGLV

NLALHNNSFAGVLPPQIGNLSNLEVLSLYHNGLTGGIPPEIGRLQRLKLLFLYENEMTGAIPDEMTNCSSLEEVD

FFGNHFHGPIPASIGNLKNLAVLQLRQNDLTGPIPASLGECRSLQALALADNRLSGELPESFGRLAELSVVTLYN

NSLEGALPESMFELKNLTVINFSHNRFTGAVVPLLGSSSLTVLALTNNSFSGVIPAAVARSTGMVRLQLAGNRLA

GAIPAELGDLTELKILDLSNNNFSGDIPPELSNCSRLTHLNLDGNSLTGAVPPWLGGLRSLGELDLSSNALTGGI

PVELGGCSGLLKLSLSGNRLSGSIPPEIGKLTSLNVLNLQKNGFTGVIPPELRRCNKLYELRLSENSLEGPIPAE

LGQLPELQVILDLSRNKLSGEIPASLGDLVKLERLNLSSNQLHGQIPPSLLQLTSLHLLNLSDNLLSGGIPGALS

AFPAASFAGNGELCGAPLPSCGAPRRLPGAEVSAIVAAIAVVSAAVCVALLYIMLRMWSNWRAVASVSSSDGEET

ASSVAAAHGKWCAGDGKYWKVGSVSVASSAAEEKYSSASSETTSVLHGKPAEAAGGGAGAVKPASKC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	228	251	0.045
LRR [Pfam ls]	252	275	0.033
LRR [Pfam ls]	276	299	0.052
LRR [Pfam ls]	324	347	3.1
LRR [Pfam ls]	348	371	0.052
LRR [Pfam ls]	372	395	0.0044
LRR [Pfam ls]	396	419	0.75
LRR [Pfam ls]	420	442	2.3
LRR [Pfam ls]	445	469	0.51
LRR [Pfam ls]	476	498	5.8
LRR [Pfam ls]	499	522	0.0047
LRR [Pfam fs]	547	570	4.8e-05
LRR [Pfam ls]	547	570	0.00082
LRR [Pfam ls]	595	618	2
LRR [Pfam ls]	619	642	1.3
LRR [Pfam ls]	643	666	1.8
LRR [Pfam ls]	691	713	5.4
LRR [Pfam ls]	714	737	5.2
LRR [Pfam ls]	762	785	0.0011
LRR [Pfam ls]	786	809	0.0062
LRR [Pfam ls]	810	833	0.069
LRR [Pfam ls]	834	857	0.013
LRR [Pfam ls]	858	881	0.67
LRR [Pfam ls]	882	905	0.52
LRR [Pfam ls]	931	954	0.021
LRR [Pfam ls]	955	978	0.015

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	204	227	3.9
LRR [sensitive, ls]	204	227	100
LRR [sensitive, ls]	228	251	0.0017
LRR [sensitive, ls]	228	251	0.045
LRR [sensitive, ls]	252	275	0.0012
LRR [sensitive, ls]	252	275	0.033
LRR [sensitive, ls]	276	299	0.0019
LRR [sensitive, ls]	276	299	0.052
LRR [sensitive, ls]	300	323	1.1
LRR [sensitive, ls]	300	323	29
LRR [sensitive, ls]	324	347	0.11
LRR [sensitive, ls]	324	347	3.1
LRR [sensitive, ls]	348	371	0.0019
LRR [sensitive, ls]	348	371	0.052
LRR [sensitive, ls]	372	395	0.00016
LRR [sensitive, ls]	372	395	0.0044
LRR [sensitive, ls]	396	419	0.028
LRR [sensitive, ls]	396	419	0.75
LRR [sensitive, ls]	420	442	0.085
LRR [sensitive, ls]	420	442	2.3
LRR [sensitive, ls]	445	469	0.019
LRR [sensitive, ls]	445	469	0.51
LRR [sensitive, ls]	476	498	0.21
LRR [sensitive, ls]	476	498	5.8
LRR [sensitive, ls]	499	522	0.00017
LRR [sensitive, ls]	499	522	0.0047
LRR [sensitive, ls]	523	546	0.35
LRR [sensitive, ls]	523	546	9.5
LRR [sensitive, ls]	547	570	3e-05
LRR [sensitive, ls]	547	570	0.00082
LRR [sensitive, ls]	571	594	0.31
LRR [sensitive, ls]	571	594	8.5
LRR [sensitive, ls]	595	618	0.073
LRR [sensitive, ls]	595	618	2
LRR [sensitive, ls]	619	642	0.049
LRR [sensitive, ls]	619	642	1.3
LRR [sensitive, ls]	643	666	0.068
LRR [sensitive, ls]	643	666	1.8
LRR [sensitive, ls]	667	690	0.28
LRR [sensitive, ls]	667	690	7.6
LRR [sensitive, ls]	691	713	0.2
LRR [sensitive, ls]	691	713	5.4
LRR [sensitive, ls]	714	737	0.19
LRR [sensitive, ls]	714	737	5.2
LRR [sensitive, ls]	738	761	0.27
LRR [sensitive, ls]	738	761	7.4
LRR [sensitive, ls]	762	785	4.1e-05
LRR [sensitive, ls]	762	785	0.0011
LRR [sensitive, ls]	786	809	0.00023
LRR [sensitive, ls]	786	809	0.0062
LRR [sensitive, ls]	810	833	0.0025
LRR [sensitive, ls]	810	833	0.069
LRR [sensitive, ls]	834	857	0.00048
LRR [sensitive, ls]	834	857	0.013
LRR [sensitive, ls]	858	881	0.025
LRR [sensitive, ls]	858	881	0.67
LRR [sensitive, ls]	882	905	0.019
LRR [sensitive, ls]	882	905	0.52
LRR [sensitive, ls]	906	930	2.4
LRR [sensitive, ls]	906	930	64
LRR [sensitive, ls]	931	954	0.00078
LRR [sensitive, ls]	931	954	0.021
LRR [sensitive, ls]	955	978	0.00054
LRR [sensitive, ls]	955	978	0.015

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	132	1030	1e-138
Xa21 [O. sativa]	133	706	5e-77
Cf-9 [L. pimpinellifolium]	138	874	9e-68
CLV2 [A. thaliana]	165	758	4e-69
Cf-9 [L. pimpinellifolium]	205	684	3e-49
Xa21 [O. sativa]	208	660	9e-57
Xa21 [O. sativa]	256	802	2e-72
Xa21 [O. sativa]	280	1030	4e-78
Xa21 [O. sativa]	308	874	5e-81
Cf-9 [L. pimpinellifolium]	347	997	3e-72
CLV2 [A. thaliana]	375	989	2e-62
Cf-9 [L. pimpinellifolium]	490	974	3e-46
N [N. glutinosa]	517	877	2e-13
Xa21 [O. sativa]	699	995	1e-30
CLV2 [A. thaliana]	732	975	1e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	1008	1030	out -> in

Report for 2971.m00146

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)