Report for 2972.m00173

 > 2972.m00173, length: 1893, copies: 1 

MASPGEMSVSNPLRFQGFPCNLGKRNGFIAARSSGLRRSQQCFHRHLCWPGVRRASVPNVRLLPTPGALVSRGLD

SSLVHKSDNASEAGVIQLYRIPYLQDSETIELLRQVQAKVSSNIVGIKTEQCFNIQLDNALASEKLATLQWLLAE

TYEPDKLQAQSFLEEEVARNPYSVIVEVGPRMTFSTAFSTNAVSICKSLSLMEVTRLERSRRYLLCLDPGYGPLD

ESQLNDFTALVHDRMTECVYPKKLTSFHSDVVPEPVRIVPVIERGREALEEINVKMGLAFDEQDIKYYTHLFRDD

IKRNPTTVELFDIAQSNSEHSRHWFFNGKLVIDGETMPRTLFQLVKSPLKANPDNNSVIGFNDNSSAIKGYPANQ

LRPTVPGSTSPLSVMMRELDILFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGKGSFVVASTAGYCVGNLRIE

GAYAPWEDPSFSYLSNLASPLQILIDASDGASDYGNKFGEPLIQGFTRNFGTRLLNGERREWLKPIMFSGAIGQI

DHAHISKGDPEIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMAQKLYRVVRACAEMGESN

PIISIHDQGAGGNCNVVKEIIYPKGAEIDIRSIVVGDHTLSVLEIWGAEYQEQDALLVKPESRSLLESLCERERV

SMAVIGTINGCGKIVLIDSAAVEHAKLNGLPPPTPVEDLELEKVLGDMPQKTFEFKRVSVVSEPLDIARGVTIMD

ALKRVLSLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQLPLADVAVIAQTYTDLTGGACAIGEQPTKGLLNPKA

MARLAIGEALTNLVWAKVSSLSDVKASGNWMYAAKLDGEGADMYDAAVALADCMIQLGIAIDGGKDSLSMAAQCD

GEVVKAPGNLVISAYVTCPDITLTVTPDLKLGKDGVLLHIDLSKGKRRLGGSALAQAFDQIGNDCPDIDDVLYLK

KAFEAVQELLGERLISAGHDISDGGLIVSVLEMAFAGNCGVKLNIDSEDSSLLQALFAEELGLLLEVHLKDLSVV

KQKLQAGGISANVIGKVTASPDIELVVDGRLHLKEKTSDLRDIWEETSFQLEGLQRLKSCVRLEKEGLKHRTSPS

WSLSFTPKFTDEKLLTASSKPKVAILREEGSNGDREMAAAFYAAGFEPWDITMSDLLAGKSSLEDYRGIAFVGGF

SYADVLDSAKGWAASIRFNQPLIQQFQNFYNRPDTFSLGVCNGCQLMALLGWVPGSDVGGSLGSGGDMSQPRFIH

NESGRFECRFTSVSIGASPAIMFKGMEGSTMGIWSAHGEGRAFFPDENVLASVVKSNLAPVRYCDDANNITEVYP

FNPNGSPLGIAALCSPDGRHLAMMPHPERCFMMWQYPWSPKDWQLEKSGPSPWLRMFQNARECCVTYRDLIDGHM

MTEAWSYGLFWILKPCCFEFCCWFETRNPVLLLDAQQFAVLLLMNRIVEGRSRTRHLGQEDTNCRMRRLIVLFKA

VGAKLLPSEQLANLITPSPSTYIYPHTHIVQDKLRQNRSEVEMVRAIGPLLLLAHVLVFVVSIAAAAAPVRRPRC

DAGDRAALLAVKAAFNNASYFQSWTPDIACCHWYGVDCGGDDYDYDPTDGDRVLSLAIIRDDNVTGGIPGDAIAR

LTRLQELMFFKVPGVTGPIPAALATLTALRELTISRTALSGSIPSFIGDKFTALQSLDLSFNSLTGAIPASLAKP

PKLISIDLSRNQLTGSIPRLLLSKAGQQAFLTLSHNNLSGRIPAAFGAVNFVQIDLSRNQLTGDASMLFGSGKKE

LGSVYLSRNALSFDMSELRLPERLSFLDVSHNAIRGGIPAQVANLSNLQLLNVSYNRMCGEVPTAQQVPLRCAAR

RLPLMFDPDLETVTTTVL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	1703	1726	0.098
LRR [Pfam ls]	1727	1751	0.36
LRR [Pfam ls]	1823	1846	0.31

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	1678	1702	0.43
LRR [sensitive, ls]	1678	1702	12
LRR [sensitive, ls]	1703	1726	0.0036
LRR [sensitive, ls]	1703	1726	0.098
LRR [sensitive, ls]	1727	1751	0.013
LRR [sensitive, ls]	1727	1751	0.36
LRR [sensitive, ls]	1775	1798	0.76
LRR [sensitive, ls]	1775	1798	21
LRR [sensitive, ls]	1823	1846	0.012
LRR [sensitive, ls]	1823	1846	0.31
LRR [sensitive, ls]	1847	1869	0.79
LRR [sensitive, ls]	1847	1869	21

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	1558	1863	8e-22
Xa21 [O. sativa]	1577	1865	2e-17
Xa21 [O. sativa]	1605	1864	1e-26
FLS2 [A.thaliana]	1606	1865	1e-24
Xa21 [O. sativa]	1621	1863	2e-12
FLS2 [A.thaliana]	1622	1863	9e-19
FLS2 [A.thaliana]	1627	1863	3e-20
FLS2 [A.thaliana]	1629	1863	4e-22
FLS2 [A.thaliana]	1629	1865	1e-18
CLV2 [A. thaliana]	1631	1869	2e-17
CLV2 [A. thaliana]	1633	1860	3e-12
Cf-9 [L. pimpinellifolium]	1634	1863	1e-12
FLS2 [A.thaliana]	1634	1784	2e-13
Cf-9 [L. pimpinellifolium]	1638	1868	4e-13
CLV2 [A. thaliana]	1664	1863	1e-18
CLV2 [A. thaliana]	1665	1865	2e-19
FLS2 [A.thaliana]	1666	1863	2e-16
FLS2 [A.thaliana]	1666	1863	6e-15
Xa21 [O. sativa]	1672	1864	2e-13
CLV2 [A. thaliana]	1682	1864	3e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
AIR synthase related protein, N-terminal dom	351	526	7.9e-08
AIR synthase related protein, C-terminal dom	536	694	4.4e-29
AIR synthase related protein, C-terminal dom	932	1078	1.2e-25

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2972.m00173

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)