Report for 2992.m00109

 > 2992.m00109, length: 1270, copies: 1 

MEAAVGVASWLLGKVLTQLSSDLVAAYVASTELGLNVEEIKRDLKYTQGLLHMAQGRKDIRDNIGLQGLLQDLSK

KADEAEDALDEIHYFIIQDQIDGTHEVIPEADGGLRGHALHGRHALRHTAGNWFSCFFCSSARARHDADDSQDTA

NSHGDVIDQVGNLPFNRVDMSNKIKSVVKGIHDLCTCISRLLQINQTAGEWDTSLERPPTSSTITQDKLFGREII

FRQTLHDLTNCNIPSGTLSVLPIVGPGGIGKTTFAQHLYNDKRTDAYFPIKVWVCVSTNFDVLRLTQEILKCIPH

DKSAGSEAVHNSSNLDQLQKAIAERLKSQMFLLVLDDMWKCGSEAEWKNLVAPFTKGEAKGSVILVTTRFPSIAQ

MLKTTETIQLQGLEDSEFFTFFEECIFGQDKPECYKRDLIGIAKEISKKLRGSPLAAKTVDRLLKNNLSHECWTE

VLEMDEWKNLQSNVDIMPALKISYDYLPYYLKKCFSYCALYPEDHRFNNLEITCFWEAIGIIDSGYQNDRAEAIG

LKYLDELIGNGFLMKESLCLHACSSVDNRFAATHNVFRRSAAALAERHGNYILPDDINRLANLHYFLAKKELCSN

IRGIGKMKYLRRLQEFHVKKERTGFELRELGYLKELGGALQINNLENIATTEEANGAELMLKRNLKTLELVWGAE

QQNSGSEIIEGLQPPSNLRAFGIRNHGGSTGPSWLCDDICVKGLRSLHLEGISWGTLPPFGQFIYLEELTLINIA

GIRQFGPDFGGVTQRSFLHLKKVRFVAMPELVEWVGGAHCHLFSKLASIECEECPNLSMLLPPSSERCISHAQDI

NITCFPNLCSLNIRNCPKLSLPPMPHTSTLTHIIVEGDYQEVLHLEEKILSVNGYGGSLAFHNLQKVENMKIEKM

SHISWTDLQKLNSLSSLTIIGCKSLLCSEVDEGVIFHSVEQLNLYKCHLAGISLAKLLNCFPALTKFELNRSGEA

QEVEEAELRFPSPRLLRYVKIFGYENLVLPMEVGGSFQDFSSLQELEFWRCGKIFASWFMVEAGTHHTSKPFLAP

LKELTIYSESSVQSMAVLSSLTSLTRLRLVDCDNLTVVGFDPVMTGSLSELVIYNKPDIDDNNHRCSVAAHLFAA

VSTTKAIPVGSFQQLKKLEVDSISAVFVAPICSLLASTLYRLRFTYDLWMKNFTKEQEQALQLLTSLRNLEFYEC

HRLQSLPEGLHLLSSICTLGIVGCPEIRSLPEEGIPASLKKLLAMRCSVDLKDQLKRLEESNQDLQVFYI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	202	517	2.6e-43
NB-ARC [Pfam fs]	243	517	7.7e-44
LRR [Pfam ls]	1191	1214	0.91

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	938	962	0.76
LRR [sensitive, ls]	938	962	20
LRR [sensitive, ls]	1073	1099	1.1
LRR [sensitive, ls]	1073	1099	30
LRR [sensitive, ls]	1191	1214	0.034
LRR [sensitive, ls]	1191	1214	0.91

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	1	532	4e-51
Xa1 [Oryza sativa]	158	540	5e-64
RPS2 [A. thaliana]	170	942	8e-17
Pib [Oryza sativa].	204	603	1e-19
Pi-ta [Oryza sativa]	218	538	5e-20
Mla1 [Hordeum vulgare].	243	538	3e-21
RPM1 [A. thaliana]	245	538	2e-24
Xa1 [Oryza sativa]	572	1242	1e-23
I2 [L. esculentum]	578	1247	7e-24
Xa1 [Oryza sativa]	684	1258	6e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	65	88

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 2992.m00109

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)