Report for 3002.m00100

 > 3002.m00100, length: 402, copies: 1 

MTTDLLLLLLLLSSSRLALAAAFGVWINGAASSSPQSQEYEALQALKAAVVEDPRGALASWQGPNVCAYRGVYCS

APPDDAAASGAVVAGIDLNRANLRGTLPAAVSLLAHLTFLHLNSNRLAGQPPDSLRDLQYLTELDLSNNLFSGPF

PAAALLIPSLVYLDLRFNAFSGGIPAEAFAKSSLDALFLNNNQFDGEIPETLWSSPATVITLANNRLTGPVPSAY

GYGGRVREVLFLNNKLTGCIPEELGFLPTIEVLDLSYNSLSGHLPPTLSCLAGIEVLNIAHNQFTGELPDLVCDL

KRITNLSVSFNFFSGISQHCNRLAGRSVFDFVGNCVPGRGLQRPPPECDGGPGDGGLSCLRSIPVTRPVPCAQAS

VSVGVGVIVGGAMPSFGAGGVVTVTVP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	111	134	0.091
LRR [Pfam ls]	159	182	3.9
LRR [Pfam ls]	254	277	0.02
LRR [Pfam ls]	278	301	0.66

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	111	134	0.0033
LRR [sensitive, ls]	111	134	0.091
LRR [sensitive, ls]	135	156	0.44
LRR [sensitive, ls]	135	156	12
LRR [sensitive, ls]	159	182	0.14
LRR [sensitive, ls]	159	182	3.9
LRR [sensitive, ls]	183	207	0.36
LRR [sensitive, ls]	183	207	9.9
LRR [sensitive, ls]	230	253	1.9
LRR [sensitive, ls]	230	253	51
LRR [sensitive, ls]	254	277	0.00072
LRR [sensitive, ls]	254	277	0.02
LRR [sensitive, ls]	278	301	0.024
LRR [sensitive, ls]	278	301	0.66
LRR [sensitive, ls]	302	324	0.79
LRR [sensitive, ls]	302	324	21

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	11	338	1e-30
Xa21 [O. sativa]	42	284	5e-20
CLV2 [A. thaliana]	51	315	8e-20
Xa21 [O. sativa]	67	315	1e-26
CLV2 [A. thaliana]	83	315	1e-24
Cf-9 [L. pimpinellifolium]	84	326	4e-16
FLS2 [A.thaliana]	84	335	6e-25
Cf-9 [L. pimpinellifolium]	85	294	4e-15
FLS2 [A.thaliana]	87	334	1e-21
Cf-9 [L. pimpinellifolium]	91	315	6e-19
Cf-9 [L. pimpinellifolium]	91	315	6e-17
CLV2 [A. thaliana]	91	315	1e-22
CLV2 [A. thaliana]	91	345	8e-17
FLS2 [A.thaliana]	91	338	3e-23
FLS2 [A.thaliana]	91	339	8e-23
FLS2 [A.thaliana]	91	295	6e-22
Xa21 [O. sativa]	91	225	8e-13
Cf-9 [L. pimpinellifolium]	93	337	9e-15
CLV2 [A. thaliana]	93	383	6e-17
FLS2 [A.thaliana]	93	315	9e-29
Xa21 [O. sativa]	93	315	8e-18
FLS2 [A.thaliana]	97	315	2e-25
FLS2 [A.thaliana]	97	315	2e-23
Cf-9 [L. pimpinellifolium]	106	314	8e-17
Xa21 [O. sativa]	115	316	3e-23
CLV2 [A. thaliana]	139	320	2e-11
Xa21 [O. sativa]	210	338	3e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	27	in -> out

Report for 3002.m00100

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)