Report for 3007.m00137

 > 3007.m00137, length: 640, copies: 2 

MEPPFFLLLLLLVVSSSSPSAALLSAKGVNNEVQALIVIKNLLKDPHGVLKSWDQNSVDPCSWAMITCSPDFLVT

GLEAPSQHLSGLLSPSIGNLTNLETVLLQNNNITGPIPAEIGRLENLKTLDLSSNSFYGEIPSSVGHLESLQYLR

LNNNTLSGPFPSASANLSHLVFLDLSYNNLSGPIPESLARTYNIVGNPLICDANREQDCYGTAPMPMSYSLNGSR

GGALPPAARDRGHKFAVAFGSTAGCMGLLLLAAGFLFWWRHRRNRQILFDVDEQQIENVNLGNVKRFSFRELQAA

TEGFSGKNILGKGGFGNVYRGQLPDGTLVAVKRLKDGNAAGGEAQFQTEVEMISLALHRNLLRLYGFCMTATERL

LVYPFMSNGSVASRLKAKPALEWGTRRRIAVGAARGLVYLHEQCDPKIIHRDVKAANVLLDEACEAVVGDFGLAK

LLDHRESHVTTAVRGTVGHIAPEYLSTGQSSDRTDVFGFGILLLELVTGQTALEFGKSSNHKGAMLDWVKKMQSE

KKVEVLVDKGLGGGYDRVEVEEMVQVALLCTQYLPAHRPRMSDVVRMLEGDGLADRWEKASGHSTAAADSLSHSH

RTSDPAPPAADFAAAFGRCFSDLTDDSSLLVQAVELSGPR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	97	120	1.6
LRR [Pfam ls]	121	144	0.11
LRR [Pfam ls]	145	168	0.23
LRR [Pfam ls]	169	189	0.45
Ser/Thr pkinase [Pfam fs]	304	501	5.3e-47
Ser/Thr pkinase [Pfam ls]	304	575	4.4e-43

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	97	120	0.069
LRR [sensitive, ls]	97	120	1.6
LRR [sensitive, ls]	121	144	0.0048
LRR [sensitive, ls]	121	144	0.11
LRR [sensitive, ls]	145	168	0.0098
LRR [sensitive, ls]	145	168	0.23
LRR [sensitive, ls]	169	189	0.019
LRR [sensitive, ls]	169	189	0.45

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	5	188	1e-14
Xa21 [O. sativa]	6	190	3e-24
FLS2 [A.thaliana]	24	188	7e-27
CLV2 [A. thaliana]	72	186	1e-10
FLS2 [A.thaliana]	73	573	2e-56
FLS2 [A.thaliana]	74	190	2e-17
FLS2 [A.thaliana]	74	188	3e-16
FLS2 [A.thaliana]	74	188	4e-15
FLS2 [A.thaliana]	74	195	7e-11
Xa21 [O. sativa]	74	386	7e-25
Xa21 [O. sativa]	74	185	7e-15
Cf-9 [L. pimpinellifolium]	77	186	3e-13
CLV2 [A. thaliana]	77	189	8e-12
FLS2 [A.thaliana]	77	185	6e-17
FLS2 [A.thaliana]	77	194	7e-16
Xa21 [O. sativa]	77	194	8e-13
FLS2 [A.thaliana]	79	190	3e-15
FLS2 [A.thaliana]	81	188	8e-14
Cf-9 [L. pimpinellifolium]	83	195	5e-11
FLS2 [A.thaliana]	83	188	6e-15
CLV2 [A. thaliana]	84	194	2e-13
CLV2 [A. thaliana]	84	188	5e-12
FLS2 [A.thaliana]	84	194	8e-12
Xa21 [O. sativa]	84	185	2e-15
Xa21 [O. sativa]	86	188	2e-13
CLV2 [A. thaliana]	88	195	3e-12
Rpg1 [Hordeum vulgare]	285	581	4e-34
Pto [L. esculentum]	291	574	7e-44
Rpg1 [Hordeum vulgare]	292	574	1e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	4	26	out -> in
putative TM domain	4	26	out -> in
putative TM domain	242	264	in -> out
putative TM domain	242	264	in -> out

Report for 3007.m00137

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)