Report for 3009.m00077

 > 3009.m00077, length: 750, copies: 1 

MDCYYKLPVEKLAMRLLLFIGLVISLQFMADGASLPDDRCLKKCGDVDILYPFGIGEGCAIEGFVLSCSKTEDGR

GDVALYGTTPVLNISLRYGQVRMKSTYISSMCYNLSTKNMDYKNWLLNLTTSPFTISQKENIFIVIGANTAANMF

GYSRYSTMLNMIGCLSQCSPYNSFTAQDGSCVGIGCCQAVLSNNISYHEVQFNPLYNTTTSYNNRSITDRASYCG

YAVVMEAAAFRFRTAYLNSTAFWDEHNGSVPVVLNWVVGNETCQVAKQMGDRYACRSKNSMCIDSSSGPTGYLCN

CTEGYRGNPYLPDGCQDINECDVNNPPPCPGRCKNIPGSFTCSSPSQSRTVILAVSLSVGIVAMAMIVTCSYLVR

ERKKLANIKKKYFQQHGGMLLLQEIGLKQGQSTAFTIFTEAELIEATNKFEDKNVLGRGGHGTVYRGMLKDSRLI

AIKRCMSMIDDRQKKEFGKEMLILSQINHKNIVKLLGCCLEVEVPMLVYEFIPNGTLFHFIHGGNDCRNIPFSTR

VRIAHESAQALDYLHSSASPPIIHGDVKTSNILLDENYTAKISDFGASILVPTDEAQFVTLVQGTCGYLDPEYMQ

TCQLTDKSDVYSFGVVLLELLTGKMAFNLEGPENEKSLSLSFLCAMKEGRLMDIIDHHIQTDENAGVLEEVADLA

SQCLEMIGDNRPSMRDVADKLGRLRKVMQHPWAQHDPEEMESLLGESSVAGLEMVSTGNFSMEGGAVQGILESGR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam fs]	425	623	1.8e-43
Ser/Thr pkinase [Pfam ls]	425	697	1.2e-43

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	343	700	6e-33
Pto [L. esculentum]	413	696	6e-46
Rpg1 [Hordeum vulgare]	413	699	2e-23
Rpg1 [Hordeum vulgare]	422	730	3e-31

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	12	29	in -> out
putative TM domain	12	29	in -> out
putative TM domain	352	374	out -> in
putative TM domain	352	374	out -> in

Report for 3009.m00077

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)