Report for 3013.m00117

 > 3013.m00117, length: 929, copies: 1 

MEGVLVSAATGAMNSVLAKLAAFLGDEYKHAKGVRDDLAFLQSELTTMNKALHALADADQLDELSKDWRDRVRDL

AYDIEDCIDLSVHRLHGAGESGLAAKMARMAKKIGAFRQIASQIQQLKARVLEVSERRNRYTLHGLVPTSSDASS

STTKVDARLCALWTETKHLVGIDGPRDDIISRLEQESSSAAAQHDVRMVSIVGCAGLGKTTLAKQVYDKIKAEFE

YKAFVSVSQRPNIKELLLNISTQVGKSTNTWDDVANLVDNLREHLKQKRYIIVVDDIWSPEPWNFIGEALVKTSH

GSIIILTTRVKEVAISSSSSHGGFVYQMKHLDGAHSKRLFYKRIFDCEEKCPPKFELASEEILKRCDGIPLAIIS

ISSFLADHESLYHWNEVKKIISSPLPGNEYLETMQSVLALSYYNLPHDIRSCLLYLSAFPEDCEIAKSSLVSRWI

AEGFINARPGENVYEAGLRYFNVLINRSLIQPWNEHYGEVLTCRVHDVILNFIVSKSVEENFLFLLDPSGLVPLQ

HSNYCKVRRLSLQGNYCQEEFASRMMPIKLHVRSLICSVDYTGFHPLSEFKVARVLDLDGCQSLTNNHLANIEKL

VHLQYLRIRGRVTVLPANIGRLQHLETLDIRGSEVKELPPSIVLLQRLARLSVSQDVKFPAEGVSKMQALEELTG

LTLFCQPGSFLKELGELTKLRVLVVYWKAYHARDSDEAQAEHKKSCKKIFTSSLNALDRHSLHSLDFVVFMERFL

FDPWFLALQNLKRFGVESTPRMINIPSWIRLAAKLEKLELSKAYVTQNDFEMLGDLKALEYLALPCSDTRGSWLT

ISNHGFRCLKFAFLCNVLFMPDSMPNLKDLRIDIVLDEVGENDSVFEHLPSTLCRVNVDIIGNPPSTPRDVASEL

EEKILNVAKTHPNRPTLTTRTLDRDILVD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	154	460	2.2e-58
NB-ARC [Pfam ls]	154	460	1.6e-58
LRR [Pfam ls]	624	646	2.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	577	601	2.9
LRR [sensitive, ls]	577	601	67
LRR [sensitive, ls]	624	646	0.097
LRR [sensitive, ls]	624	646	2.2
LRR [sensitive, ls]	784	807	0.76
LRR [sensitive, ls]	784	807	18

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	3	814	7e-38
RPM1 [A. thaliana]	9	795	5e-57
Mla1 [Hordeum vulgare].	10	850	1e-115
Pi-ta [Oryza sativa]	32	629	6e-73
Pib [Oryza sativa].	66	343	5e-11
Pib [Oryza sativa].	93	648	7e-61
M [L. usitatissimum]	165	434	4e-13
RPS2 [A. thaliana]	183	790	2e-29
Xa1 [Oryza sativa]	196	697	5e-30

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3013.m00117

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)