Report for 3013.m00118

 > 3013.m00118, length: 863, copies: 1 

MEGVLVSAATGVMNSVLAKLTAFLGEEYKHAKGVRDDLVFLRSELSTMNIVLQKLADVDQLDELSRDWRDRVRDL

AYDIEDCIDLSVHRLRGSAGESGLAAKVARMAKKIGAFRQIASQIQKLKARVVEHGVRMVSIVGCAGLGKTTLAK

QVYDKIKGEFECKAFVSVSQKPNIKELILNISNQVGNKSTNMSDDVANLVDNLREYLKQKRYIVVVDDIWNPEPW

NFIGEALVKTSPGSIIILTTRVKEVAMSSSSSHGGFVYPMKHLDGAHSKRLFYKRIFDCEEQCPPEFEQASKEIL

ERCDGIPLAIISISSFLADRQSLYHWNEVKKIISSPIPGNKDLETMQSVLALSYYNLPHDLRSCLLYLSAFPEDC

EIGKTRLVSRWIAEGFINARPGENLYEAGLRYFNVLINQSLIQPWNEHYGEVLSCRVHDVILNFIVSKSVEENFM

TLLDPSGPVPLQHSNCCKVRRMSLQGSYCQEKFASSMKSIKPHVRSLACSMDCTGLHPLSEFKVARVLDLEGCES

LTNNHLANIEKLAYLRYLSISGTGVSVLPANIGRLQHLETLDILDTQVKELPPSIVLLQQLVRLSVNSDVMFPAE

GVSKMQALEQLTGLLPFNQPVSFLKELGELTKLRVLAVSWIPDHVRDSDEAHAEHEKSYEKIFISSLNALDRHSL

QYLDLSLYYSYSDIAAKRFLFDSWFPSLKNLRRLSIVNGFKTTTIPSWIRLAAKLEKLELSKAYVTQDDLEMLGD

LKALEYLALPFSDTQGSWLTISNHGFRCLKFAFLCNVLFMHDSMPNLKDLHIGIRLNVVGENDSFQHLPNTLCRV

HAWISGNLDAVSKLKEKILNIANTHPNRPSLTTATYIQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	96	397	2.7e-58
NB-ARC [Pfam fs]	120	397	8.2e-60
LRR [Pfam ls]	539	561	5.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	514	538	3.3
LRR [sensitive, ls]	514	538	77
LRR [sensitive, ls]	539	561	0.25
LRR [sensitive, ls]	539	561	5.9
LRR [sensitive, ls]	562	584	1.3
LRR [sensitive, ls]	562	584	30
LRR [sensitive, ls]	729	752	1.4
LRR [sensitive, ls]	729	752	33

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	10	863	1e-111
Pib [Oryza sativa].	86	586	7e-59
Xa1 [Oryza sativa]	117	665	8e-35
I2 [L. esculentum]	118	759	6e-39
RPS2 [A. thaliana]	119	735	2e-28
Pi-ta [Oryza sativa]	129	589	4e-63
M [L. usitatissimum]	132	371	3e-11
RPM1 [A. thaliana]	134	711	3e-50

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3013.m00118

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)