Report for 3025.m00146

 > 3025.m00146, length: 575, copies: 1 

MASPAAPLALLILLVSLAIAAAQSGQPSSPPRNSTNISDAAALHTVFEKWGLEDGTMPQGYHPCGKLVWSNSSEM

EASINCSCSSNECRITHLNVTGYRNITFIPAELFSLTELVSLDLSNNNLIGQIPPQVSNLSKLETWHFNNNRLNE

SFPNASALLSIQSLKRWMFDNDIEGMVPGFIANFANLTDLRMYGMKLQGPIPENFSKLINIENLMIGDLDTEGYP

FNFTGDWVNLSTLDLRSNNLSGSIDLQQYDSSLKYLYVGENNFNGSLPDQMPQSLVALGLTHYFVNMSFMHRNYI

GTSIGAGSSVGSENLRLLNCVDMKGCNTTGLTNPVSFAVNCGGKQYTPPSDPSNMFNDDSANLGAADFHVDTNNN

WVVSHVGTDPFSNSSGIVTTGNGTNIPELYRTARTSTGSLWYYVVGLPSGKYTVQLFFAEIVIESGSGRRLFNID

IQDRNIMTDFDISKEAGGSNRPINRNYTADVTTSVLKIHLYWNGRGTCCIPRNGTYGPLVSAIRVFPSAETQASP

PPVALTSRHDEKRRGVVAGIAALSIAATVISSSAVYLWWKWVSLVKHRKA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	113	136	0.019
LRR [Pfam ls]	186	209	3.9
LRR [Pfam ls]	257	281	3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	89	112	1.2
LRR [sensitive, ls]	89	112	28
LRR [sensitive, ls]	113	136	0.00083
LRR [sensitive, ls]	113	136	0.019
LRR [sensitive, ls]	186	209	0.17
LRR [sensitive, ls]	186	209	3.9
LRR [sensitive, ls]	234	255	0.6
LRR [sensitive, ls]	234	255	14
LRR [sensitive, ls]	257	281	0.13
LRR [sensitive, ls]	257	281	3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	82	299	7e-11
Cf-9 [L. pimpinellifolium]	86	293	9e-13
Xa21 [O. sativa]	89	288	6e-13
FLS2 [A.thaliana]	90	335	9e-11
FLS2 [A.thaliana]	104	273	2e-14
FLS2 [A.thaliana]	104	286	3e-13
FLS2 [A.thaliana]	104	289	3e-12
FLS2 [A.thaliana]	104	286	2e-11
Cf-9 [L. pimpinellifolium]	112	272	8e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	542	564	out -> in
putative TM domain	542	564	out -> in

Report for 3025.m00146

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)