Report for 3028.m00170

> 3028.m00170, length: 905, copies: 1
MAAGGGGGGSAAARPALDCVWFPVKFSSRKTSGFNLLIKNAGKITDAACISSERDALLAFKAGFADPAGGALRFW
QGQDCCAWSGVSCSKKIGSVVSLDIGHYDLTFRGEINSSLAVLTHLVYLNLSGNDFGGVAIPDFIGSFEKLRYLD
LSHAGFGGTVPPRLGNLSMLSHLDLSSPSHTVTVKSFNWVSRLTSLVYLDLSWLYLAASSDWLQATNTLPLLKVL
CLNHAFLPATDLNALSHTNFTAIRVLDLKSNNFSSRMPDWISKLSSLAYLDLSSCELSGSLPRNLGNLTSLSFFQ
LRANNLEGEIPGSMSRLCNLRHIDLSGNHFSGDITRLANTLFPCMNQLKILDLALNNLTGSLSGWVRHIASVTTL
DLSENSLSGRVSDDIGKLSNLTYLDLSANSFQGTLSELHFANLSRLDMLILESIYVKIVTEADWVPPFQLRVLVL
YGCQVGPHFPAWLKSQAKIEMIELSRAQIKSKLPDWLWNFSSTISALDVSGNMINGKLPKSLKHMKALELLDMSS
NQLEGCIPDLPSSVKVLDLSSNHLYGPLPQRLGAKEIYYLSLKDNFLSGSIPTYLCEMVWMEQVLLSLNNFSGVL
PNCWRKGSALRVIDFSNNNIHGEISSTMGHLTSLGSLLLHRNKLSGPLPTSLKLCNRLIFLDLSENNLSGTIPTW
IGDSLQSLILLSLRSNNFSGKIPELLSQLHALQILDIADNNLSGPVPKSLGNLAAMQLGRHMIQQQFSTISDIHF
MVYGAGGAVLYRLYAYLYLNSLLAGKLQYNGTAFYIDLSGNQLAGEIPIEIGFLSGLTGLNLSGNHIRGSIPEEL
GNLRSLEVLDLSRNDLSGPIPQCFLSLSGLSHLNLSYNDLSGAIPFGNELATFAESTYFGNAHTTVKKLFVPQKE
ASTKL

HMM searches against classifier domains (fs and ls)

DomainBeginEndE-value
LRR [Pfam ls]1201441.3
LRR [Pfam ls]1451680.059
LRR [Pfam ls]2472702.9
LRR [Pfam ls]2712940.013
LRR [Pfam ls]3193460.052
LRR [Pfam ls]3713940.34
LRR [Pfam ls]3954190.02
LRR [Pfam ls]4935164.4
LRR [Pfam ls]6096321
LRR [Pfam ls]6576810.78
LRR [Pfam ls]6827051.2
LRR [Pfam ls]7067290.13
LRR [Pfam ls]8068290.0048
LRR [Pfam ls]8308530.012
LRR [Pfam ls]8548766.5

Searches for specific additional domains (secondary HMMs)

DomainBeginEndE-value
LRR [sensitive, ls]941192.4
LRR [sensitive, ls]9411956
LRR [sensitive, ls]1201440.057
LRR [sensitive, ls]1201441.3
LRR [sensitive, ls]1451680.0025
LRR [sensitive, ls]1451680.059
LRR [sensitive, ls]2472700.12
LRR [sensitive, ls]2472702.9
LRR [sensitive, ls]2712940.00056
LRR [sensitive, ls]2712940.013
LRR [sensitive, ls]2953152.5
LRR [sensitive, ls]29531557
LRR [sensitive, ls]3193460.0022
LRR [sensitive, ls]3193460.052
LRR [sensitive, ls]3473701.2
LRR [sensitive, ls]34737029
LRR [sensitive, ls]3713940.014
LRR [sensitive, ls]3713940.34
LRR [sensitive, ls]3954190.00087
LRR [sensitive, ls]3954190.02
LRR [sensitive, ls]4444671.1
LRR [sensitive, ls]44446726
LRR [sensitive, ls]4684910.9
LRR [sensitive, ls]46849121
LRR [sensitive, ls]4935160.19
LRR [sensitive, ls]4935164.4
LRR [sensitive, ls]5175370.68
LRR [sensitive, ls]51753716
LRR [sensitive, ls]5385581.3
LRR [sensitive, ls]53855831
LRR [sensitive, ls]5615841.4
LRR [sensitive, ls]56158432
LRR [sensitive, ls]6096320.043
LRR [sensitive, ls]6096321
LRR [sensitive, ls]6336560.78
LRR [sensitive, ls]63365618
LRR [sensitive, ls]6576810.033
LRR [sensitive, ls]6576810.78
LRR [sensitive, ls]6827050.05
LRR [sensitive, ls]6827051.2
LRR [sensitive, ls]7067290.0054
LRR [sensitive, ls]7067290.13
LRR [sensitive, ls]7828051.2
LRR [sensitive, ls]78280528
LRR [sensitive, ls]8068290.00021
LRR [sensitive, ls]8068290.0048
LRR [sensitive, ls]8308530.00051
LRR [sensitive, ls]8308530.012
LRR [sensitive, ls]8548760.28
LRR [sensitive, ls]8548766.5

BLAST searches against classifier sequences

Query sequenceBeginEndE-value
CLV2 [A. thaliana]536991e-40
FLS2 [A.thaliana]538863e-77
Cf-9 [L. pimpinellifolium]808861e-68
FLS2 [A.thaliana]1097698e-57
CLV2 [A. thaliana]1215763e-38
Xa21 [O. sativa]1294217e-15
Xa21 [O. sativa]2447221e-53
Xa21 [O. sativa]2518882e-49
CLV2 [A. thaliana]2758782e-48
CLV2 [A. thaliana]3448732e-42
Xa21 [O. sativa]5368707e-36

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

DomainBeginEndE-value

NCOILSv2.0 search for coiled-coil domains

DomainBeginEnd

TM-HMM search for transmembrane domains

DomainBeginEndOrientation