Report for 3040.m00127

 > 3040.m00127, length: 1721, copies: 2 

MCVSWPSTWFFRKLKKLKACPEIADAIDELIKKCAMEGSKRHKRYNSVNVASNSSTFGVDPRMLMLYDEVDKLVG

VNRAKKHIIDWFTKEKGEKNLKVLTFADFGSLRKSNLAIKIYSQLEDQFQCTFFLSLSRNLCREKILRMIHTNLG

ITYNTSDDEGKLIDRIRDYLKDKRYFIVIDDVRDAEAWKAIELALFNNTCGSRIVITTRNSAVASCCSHDGGYVY

RMEPLSLKNSKMLFFKRAFGSEDLPNPQLEKVSDGILQKCGGLPLAIMIMSSLLADQNEEDEWKRVLTAIGSVLA

KDPDDDIMKSILSLSYYDLPHHLRACLLYLSIFPEDYEINKQRLINRWIAEGFILEEQGLTSYEVGERYFNYLIN

RCLIQPVGSKHGQAKACQVHGIILDFLACKASEENFVTPFNDDAEQGLVSENKVRVRRLHVNNHNKKEVARLTGP

VLSHVRSLTLFGDFGRIPMSAFTALRVMDQEDNWDLGGNWGLGSNHHMAHIEMMLHLRYLRLNSPLLDFVLTART

GGLENLETLDLLGVSVVELPSAITRLRRLARLYISHLARFPKGTIAKLQSLEELSEFGFVSFHQQWECLQEFSQL

TKLRMLKVKWDFDWSFVQDEEGLQSYMHALISSCNVHNLYIGNIHIWPGPYPLSLESCCPTTTCSLQKLHITYCF

ICKVPNWMSSLGNLKELKLYIYCLRAEDVKILGAIPTLIFLKLKTFYGTDGRIFIPGYKGFRCLKYFGLVMISCG

TTPEFEEGSMPNLEHLKLRFCVHEMECINGATNFGIRHLSTLNKVEVHIYGCSVSHKDYDPEADREDSNAKNAAF

LIKAAVKALPNRVTCSFELAKTYGNIGTFHGLIKIDETNQDEEVKNTLGMNCRWCAMKGSGSKVVASVGPVVEQA

LTWVAHGWWAGLRTLTRPKVVTSVRPVTEQALCDLGGLWLVGQVAHSNSCYLGKILYQLAPALELPWFLSISQSI

NQISHCFTIVSLISYIICSSKMKRKTIDCYYNPVVSRVNSTENPSPIIAQDIDPVDLQAANENAATLPSLEAEQG

QEIVATAFERDPGKRAQIFELPADQQDEARRFYISEGPFRPILQEQEYPLNDAKHRRRFRSSWSKQFCWLEYSRH

TDCAYCLTCFIFSKKPTGKAGSNASTVNGFQNWKKVNVGKECSFLKHMGDASSAHNYSVGCFNNLKNSMAQIDKV

MVRQSDKIVAIARLRLTTTIDSIRWLTFQGCPFRGHDEPLDSINRDKLLASYNKEVKEVVLENAPKNAKYTSSEV

QKEILSIVARKVQKSIREEIGTSKFCIMADEARDESKKEQMAIVLRFVNKEGLIKECFLDLVHVSDTHALTLKNS

ICAVLSGNNLNVQDIRSQGYDGASNMRGEWNGLKALILNECPYAYYIHCLAHQLQLALVAASREVQERNDELLAN

QTTEIAREIELGELDRYWTRGKSVTKYSRGDAAGALRMIFTFDFVFILLMMENIMKITDVLCQTLQKKAIDILNA

LDSVSNTKALLADLRNEGWEPLVQEVKSFCEKHEIDIPNLNNKYVDVTKSQNKNDNTTAFHYYKVDVFNVAIDQQ

MIELEDRFGSQATDLLALCVCLESRLESFDMAKCQLQLQRAFSAMKIVKTRLRNKMGDGYPSHHIQELVHLNKRS

FTSIPMKQSTVCSTIRLVAPLDHRIKDLSSFHGSSILAEIVHEHVISDYIRFNTISAHFSENPNGLFGLSR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	58	359	1.1e-51
NB-ARC [Pfam fs]	109	359	2.3e-54

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	14	761	5e-88
I2 [L. esculentum]	17	771	7e-35
Xa1 [Oryza sativa]	22	582	1e-21
Pi-ta [Oryza sativa]	54	606	1e-58
RPM1 [A. thaliana]	66	771	8e-49
RPS2 [A. thaliana]	70	695	2e-26
Pib [Oryza sativa].	94	558	3e-54

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3040.m00127

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)