Report for 3045.m00133

 > 3045.m00133, length: 380, copies: 2 

MASSPAPSPAAPPLLLAALAALAVVASASAAACSAGDRDALLAIRAALSEAHLGVFSSWTGTDCCTSWYGVSCDP

TTGRVADLTLRGEADDPVMAPAGRPASGVMSGYISDAVCRLGRLSSLILADWKQISGPIPPCVATALPYLRILEL

PGNRLTGEIPRSIGSLSRLTVLNLADNLIAGEIPSSITSLASLKHLDLTNNQLTGGIPDDVGDLTMLSRALLGRN

KLTGAIPTSVGSLTRLADLDLAENGLTGGIPDSLGGAHVLTSLYLGGNRVSGRIPASLLQNKGLGILNLSRNAVE

GAIPDVFTAESYFMVLDLSRNRLTGAVPRSLSAAAYVGHLDLSHNRLCGSIPAGPPFDHLDAASFASNSCLCGGP

LGKCT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	144	167	0.67
LRR [Pfam ls]	168	191	0.7
LRR [Pfam fs]	192	215	4.6e-05
LRR [Pfam ls]	192	215	0.00078
LRR [Pfam ls]	240	263	1.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	144	167	0.025
LRR [sensitive, ls]	144	167	0.67
LRR [sensitive, ls]	168	191	0.026
LRR [sensitive, ls]	168	191	0.7
LRR [sensitive, ls]	192	215	3e-05
LRR [sensitive, ls]	192	215	0.00078
LRR [sensitive, ls]	240	263	0.071
LRR [sensitive, ls]	240	263	1.9
LRR [sensitive, ls]	264	287	0.3
LRR [sensitive, ls]	264	287	8
LRR [sensitive, ls]	288	311	0.59
LRR [sensitive, ls]	288	311	16
LRR [sensitive, ls]	312	335	1.6
LRR [sensitive, ls]	312	335	42
LRR [sensitive, ls]	336	356	0.51
LRR [sensitive, ls]	336	356	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	13	342	3e-30
CLV2 [A. thaliana]	37	352	5e-34
FLS2 [A.thaliana]	39	369	2e-35
Cf-9 [L. pimpinellifolium]	58	353	3e-17
Xa21 [O. sativa]	101	304	3e-21
CLV2 [A. thaliana]	102	377	1e-21
FLS2 [A.thaliana]	102	354	9e-37
FLS2 [A.thaliana]	104	352	2e-26
Cf-9 [L. pimpinellifolium]	105	378	1e-32
Cf-9 [L. pimpinellifolium]	105	351	9e-18
Xa21 [O. sativa]	105	352	6e-21
FLS2 [A.thaliana]	107	353	5e-30
Xa21 [O. sativa]	116	280	7e-14
CLV2 [A. thaliana]	118	379	2e-18
CLV2 [A. thaliana]	129	368	8e-28
Xa21 [O. sativa]	129	374	9e-31
FLS2 [A.thaliana]	130	380	5e-36
Cf-9 [L. pimpinellifolium]	145	352	6e-27
CLV2 [A. thaliana]	145	365	2e-25
Xa21 [O. sativa]	148	352	1e-27
Xa21 [O. sativa]	168	353	1e-24
CLV2 [A. thaliana]	172	353	2e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3045.m00133

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)