Report for 3056.m00098

 > 3056.m00098, length: 854, copies: 2 

MAEVHLSSFAISVLGKAAFCAASEIKSAWNFKKEVRKLERSLKSICGVLKDAERKQSTSCALKVWLEDLKDVVYD

IDDVLDDVATKDLEQKVHNGFYAGVSRQLVYPFELSHKITVVRQKLDEIAANRREFALTEEIIDTQFFSSNTRET

HSFINELDIVGRDEAKNKIVEIILSAADAYAFSVLPIVGLGGIGKTALAKLVYNDMRIKKMFEKNLWACVSNVFD

LKKILDDIIQSDTGESNKQLSLQTLQNKLRGFLQENKYLLVLDDIWSDNVNDWEQLKNLLSSGGRGSVVVVTTRN

MNVASVVKTLEPYYVPELSFDECMQVFIRYAFRDEEKKDTLLLEIGKCIVEKCHGVPLAAKTLGSVLFGKQDVKE

WLRIKDANLWNIEQNKCDILPALKLSYDALPPHLKACFSCLSVFPKDYVILRELLIMFWMALGLLHKTREGDEIE

TIGGQYFNELDQRSLFQDHYVIYNGSIQSCKMHDLVHNLAMFVCHKEHAIVNCESKDLSEKVRHLVWDRKDFSTE

IEFPKHLRKANKARTFASIDNNGTMTKAFLDNFLSTFTLLRVLIFSDVDFDELPSSIGNLKHLRYLDLQWNGKIK

FLPNSLCKLVNLQTLQLSRCDQLEKMPKDVHRLISLRFLCLTLKNKYLSEHDGFCSLTSLTFLFLNSCAELSSLT

NGFGSLTSLRKLYIFNCPKLATLPSTMNQLSTLQTLSINNCHELDLLEPSEAMGGLACLDVLQLVGLPKLVCFPG

SFISAATSLQYFGIGNCNGLMKLPDFIQSFTSLKKIVINGCPELSRRCAVKSGEDFHLISHVPQITIDKKTYRKI

TPSHPECSSKCVISHRRKSLSVTVKLYSC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	143	445	2.1e-61
NB-ARC [Pfam ls]	143	445	1.2e-61
LRR [Pfam ls]	587	610	0.49
LRR [Pfam ls]	611	634	2.5
LRR [Pfam ls]	659	682	2.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	564	586	1.2
LRR [sensitive, ls]	564	586	32
LRR [sensitive, ls]	587	610	0.018
LRR [sensitive, ls]	587	610	0.49
LRR [sensitive, ls]	611	634	0.094
LRR [sensitive, ls]	611	634	2.5
LRR [sensitive, ls]	659	682	0.11
LRR [sensitive, ls]	659	682	2.9
LRR [sensitive, ls]	683	706	0.3
LRR [sensitive, ls]	683	706	8
LRR [sensitive, ls]	707	729	2.9
LRR [sensitive, ls]	707	729	76
LRR [sensitive, ls]	758	781	1.2
LRR [sensitive, ls]	758	781	31

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	12	641	1e-48
I2 [L. esculentum]	33	639	2e-89
RPM1 [A. thaliana]	34	787	1e-52
Pib [Oryza sativa].	49	335	7e-13
Pi-ta [Oryza sativa]	65	692	6e-34
L6 [L. usitatissimum]	124	419	7e-14
M [L. usitatissimum]	127	419	2e-14
Xa1 [Oryza sativa]	150	639	8e-57
Pib [Oryza sativa].	156	650	3e-38
N [N. glutinosa]	158	786	4e-26
RPS2 [A. thaliana]	159	794	4e-29
RPP5 [A. thaliana]	559	719	7e-17
RPP5 [A. thaliana]	612	794	2e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	33	55

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3056.m00098

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)