Report for 3062.m00180

 > 3062.m00180, length: 1205, copies: 2 

MESTVLSLGKSVLSGALGYAQSAVAEEVALQLGIQRDHAFIRDELHMMQAFLMAADEERDKHKVVKAWVQQVRDV

AYDVEDCLQDMAVRVGKPSWWRKCSPRMLLERRRVAQKMKELRAKVEDVSQRNNRYRLIDGSASKATDGMQSRIA

GATTMSELEETRRQQDKAKMDLVGLINTNDKELRVIGVWRKNGLLDDKSIIRRAYDDLKMRKFECYAWIRLKSLC

NQTWLLQSISRQLYENSLQETREFKMEATDLVDRILQKMGNMEEDDLVSAFEGYLNEKSYLIVLTDLSSLEEWNK

IKICFPSNDRGSRIILCTEHVEVARLCVPQDSVPPEHKKLLDDQIIYAFYEKGSQDGTLLVEPSSSSNITTSNGN

NNLTANKKLGRTETMVSTLEESQLIGRAKEKSDIIKLIKNQVSQQSQVISIWGMGGLGKTALVQDIYRSQDVSSY

FDARACVTVLRPFNSGQLIHSLAKQFGNEEKRDLSELLERKSYLVVLDDLWDTKEWDDMVAQFPNKAGSCIIVTT

REENIAKHCSKETTNAHIYKLSGIENDQALQLFTKKVFKEKTNLDEQYPYLVEQANLILKKCNGLPLAIVTIGGF

LANQPKTALAWRKINEHISAELEMNPELKTISTVLLKSYDGLPYKLKSCFLYLSIFPEDHKVSRKRLMQRWTAEG

YTTEARGKSPIEIAHDNFIELISRSMTLPVAQNASRPEGGIDYCQLHDLMREISITKSMEENLVLRLEKGCSSKT

QGTARHLAISSNWEGDKHEFENTVDLSRVRSLTVFGKWKPFFVSEKMRMLRVLDLEDTEGLVDHHLEHIGKLVHL

RYLSLRECHNICHLPDLLCDLRQLETLDIRSTFIAMLPKTIVKLRKLKYLHAGKIGIVGQQSIAERSLELCTGAC

CACYVPRLVGDFNRRDACNYNCCIQPRVLMMDLDNDFPMLPRGSRKLKSLHTLRHVHLAWGNTVIQEIERLTQLR

KLGVVGINKKNGPSFYSAISKLSQLESLSVCAGWCQGLHGTSSSSSTSPPPENLQSLKLQGALGKLPQWIGKLQN

LVKLRLMWTELEDADAAIKVLGTLPRLAILRLWEHSFNDHVVCLNFRQEQQEATAVVLFPSLRVLEVSRICSHDR

LESVQFGGGATPKLELLQFSHFIGSRVGFSSGLEELENLREFMLSGRQRQYRDDFVKDVEEQLANHPNPNKPLLR

FSLYN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	382	682	5.7e-64
NB-ARC [Pfam ls]	382	682	2.4e-64
LRR [Pfam ls]	824	847	0.46

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	799	823	2.1
LRR [sensitive, ls]	799	823	57
LRR [sensitive, ls]	824	847	0.017
LRR [sensitive, ls]	824	847	0.46
LRR [sensitive, ls]	848	870	0.81
LRR [sensitive, ls]	848	870	22
LRR [sensitive, ls]	1028	1049	2.9
LRR [sensitive, ls]	1028	1049	76

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	8	352	2e-14
Pib [Oryza sativa].	47	1170	0
Xa1 [Oryza sativa]	372	877	2e-31
I2 [L. esculentum]	383	875	6e-42
Pi-ta [Oryza sativa]	384	862	3e-42
L6 [L. usitatissimum]	394	782	8e-13
M [L. usitatissimum]	394	780	3e-14
Mla1 [Hordeum vulgare].	395	876	3e-54
RPM1 [A. thaliana]	396	1169	7e-56
RPS2 [A. thaliana]	399	1001	1e-26
N [N. glutinosa]	422	656	2e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	111	133

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3062.m00180

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)