Report for 3062.m00183

 > 3062.m00183, length: 1226, copies: 2 

MEATAVSVGKSVLGGALSYAQTAIAEEGALKLGVQRDQSFIRDELEMMQSFLLAADKEHDGHHHEVIRTWVKQVR

DVAYDVEDCLQDYAARLKKPPWWSLPCTVHRERRRIGNEMKELRAKVEDVSQRNMRYHGVSAAAPQSSSVTAAEL

LQSTAAIDDIDEARRAAKQQEKVDLVKLITNDGQGGLRVIAVLETRSGPAGTVPVVRAAYQKLKGEFECHAWVRL

MHSFDANQFIGSLVRQFKANSREGTGKTPQGTPSGVSVLNEMEAQDYNLLHDFTGYVTNKKYLVVLNGLSTIEEW

DWIKTYLPNNHNGSRVLVCTQQAEVASCCTCTDDKYKVSEIQHEGSFSKPLYVFYKEVVSQPVNSDSTKMKSETR

SSMEGASTTSDSKTVPSDGVIQEDGPKDLPESSLPPHLNRDSNTVSVKELSRSTTQLIGRGKEKDDVIKLLSDCN

PIRQVISVWGMGGIGKTTLVKSIYQSSELEKLGFERRAWVTVLRPFQLTELLRSLAQRLVKDSPGKKVESIPGLA

RSGLSTMGSEELIDKLKQDLTGKKYLIVLDDLSTTTEWDSIIRNLPINNNGSRIILTTRFKLVAQHCSKKEMNMH

NIEGLTDGDALELFLTKVRMDGDESELKPDLKEEAKIIIKKCGRLPLAVATVGGFLSARPRNIIEWREFSDRISE

EFDNNPSLEMIKKILASSYEGLTYHLKSCFLYMSIFPEDSDIRYRRLLRRWTAEGYSRATRNRSNEKVAEEQFTA

LLNKSMIQQSKTIASGKTGFCQVYNLMHEIIISKSEEENLVLVLDDHITSRSKDKVRHLVVSKSWSREKNDMQNI

VDVSHIRSLTVFGEWKSFFLSKKMRMLRVLDLEDAEGLQDPDLVPIGKLHHLKYLSLRGSFGVFNLPNSFGNLLN

LETLDIRGTWVTKLPATIGRLQNLKYVHAGSLDDEDDQPIIKLLHQFRSIREEMGTRFAVSYIMLFITAWLRNLD

VCGVKVPRGIGRLRSIHTLSIVNIARGKALLKNLKKLTQLCKLGVTGINKNNCKELCSAIADHGRLQSLLLRAEG

NAGLEGCLDNMSQPPKDLKSLQLYGNLVTLPEWIKDLKILQKLSLRNTNLKADTTMEVLGNLPMLAILRLQDNAC

EEEELCFGPERFTGLTSLELLNWESLKSVKFERGATPKLKVLLLHYCWQIHNGGFSGIETLSTLKEVSILGYNYD

QTYTEFKEQLQKQLDMNKNKPNLSIL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	416	737	1.8e-65
NB-ARC [Pfam ls]	416	737	6.1e-66
LRR [Pfam ls]	900	922	0.57

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	851	875	1.6
LRR [sensitive, ls]	851	875	43
LRR [sensitive, ls]	876	899	0.45
LRR [sensitive, ls]	876	899	12
LRR [sensitive, ls]	900	922	0.022
LRR [sensitive, ls]	900	922	0.57
LRR [sensitive, ls]	1067	1088	0.41
LRR [sensitive, ls]	1067	1088	11
LRR [sensitive, ls]	1089	1113	0.98
LRR [sensitive, ls]	1089	1113	26
LRR [sensitive, ls]	1163	1190	1.1
LRR [sensitive, ls]	1163	1190	29

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pib [Oryza sativa].	47	1221	0
Mla1 [Hordeum vulgare].	402	977	2e-50
RPM1 [A. thaliana]	409	1195	1e-67
RPS2 [A. thaliana]	413	930	2e-25
I2 [L. esculentum]	416	1121	8e-42
M [L. usitatissimum]	420	711	1e-14
Pi-ta [Oryza sativa]	431	911	3e-50
Xa1 [Oryza sativa]	434	1172	6e-30

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3062.m00183

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)