Report for 3062.m00185

 > 3062.m00185, length: 1485, copies: 2 

MEATVVSVGKSVLDGALSYAKSAIAEEVTLQLGVQQDQGFIKDELEMMLSFLRAADKEQGHNEVFQTWVKQVRDV

AYDVEDCLQDYVVRLEKPSWWRRRLSCTTLRERHRIATVMKEMRGKVEDVSLRNSRYKLLGGPAAASEPSPLTAA

ELQSTTFDDIEATRVAKQQEKVDLVDLITKDGDGLQEIAVWGTSGATGVASVVWVAYQKVKDRFPECHAWVKVMH

PFDAKEFIGSLVRQFKANSHEGTSNTPQGTPSGVSALNEMEAKDYNLLDDFCKYVANKKYLIALNGLCNIEEWDW

IKTYLPNKHNGSRILVCTPQAEVAICWKNKDGYKVSEIRQEGSFVTPLYVFYEEVKDSPTEQTDKTKSSSNATAS

TEGRKSPPVPNERKDPESQVIDLISKGGQVIAVWGMENDGVRRTALVRKVYERSVDRFLRHAWFGMTSQFNHDEL

VMELARQLNPDNCEDTCLKKKEDSQDTEGSTHRKQQEDGQNSSNKSKRGTTESTRNSLTTILSGHKCLLVFDKIS

SNAEWDSIRKSLPIESNADSRIIVTTKDSNVAIYCSGEKQYTYNYKLGSQNDGTAVGSEWVGLDSNEINSETKPS

MASSSTGGDNHPEGLRESSSPSLNKDPNAAVKKLTRCTAMVPKRSRTVVAAEEAQLMIGRRNEKDKLIKMLDSGC

DAKHRVISVISVWGMGGIGKTTLVKSIYQSSELEKLGFERRAWVPVSRPFRRIELLRILAQRLVKDSPGKKVEST

PGLARSGLSMMGSKELIDKLKQDLTGKKYLIVLDDLSTTTEWDFIKTIFPENSSSRIIVTTRPKLVAQHCSEEEE

YMHRIGDLKDKDALDLFLDKFLIYLFGNYKVCKKGDESELKPDMMDILKKNPDMIAEAELIVKKCGRLPLAIVAV

GGFLSTRPPNIREWRKFSDHISTELDENPSLEMIKKILISSYEGLSYHLKSCFLYLSIFPEDHDIRYGRLLRRWI

AEGYSRAKRNNNAEKEAEEQFTALLNKSMIQQSRTVTTGKTGFCQVHDLMREISIAKSEEENLVLVLDEHSISSS

KDKVRHLVISQSWSREQKKNNDMQNIVDVSHIRSLTVFGEWKSFFLSKKMRMLRVLDLEDTDGLEDHDIVPIGKL

HHLKYLSLRGSATILNLPSSFGNLLNLETLDIRGTWVTKLPATIGRLQNLKYLHAGMPPDDEDDTRSWVPTPPSA

ILEAFREYWTNQEEVGMGIKLFVSVLMFLISGWLRNMDLFGVKVPRRIGRLRSIHTLSVVNISRGKAMLKNLKKL

TQLRKLGVTGINKNNCEELCSVIVKHGCLQSLLLRAEGKDGLEGCLDGLSPPPKDLESLQLYGNLVKLPEWVKEL

ENLQKLSLRSTNLEADATMQVLGGLPMLDILRLQDKACKENELRFHPDCFTNLRALELISWGSLKSVIFEEGATP

KLEVLLVDHCSSIDEAGFPGIENLATLKEVSLQGYYYTEFKKKLQQQLNMIEPRPNLRIL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	640	842	7.4e-33
NB-ARC [Pfam ls]	640	985	3.2e-57
NB-ARC [Pfam fs]	868	985	4e-27
LRR [Pfam ls]	1151	1173	0.57
LRR [Pfam ls]	1352	1376	6.8

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	1102	1126	0.73
LRR [sensitive, ls]	1102	1126	19
LRR [sensitive, ls]	1127	1150	0.3
LRR [sensitive, ls]	1127	1150	7.9
LRR [sensitive, ls]	1151	1173	0.022
LRR [sensitive, ls]	1151	1173	0.57
LRR [sensitive, ls]	1330	1351	1.2
LRR [sensitive, ls]	1330	1351	33
LRR [sensitive, ls]	1352	1376	0.26
LRR [sensitive, ls]	1352	1376	6.8
LRR [sensitive, ls]	1426	1450	1.5
LRR [sensitive, ls]	1426	1450	39

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pib [Oryza sativa].	47	605	2e-79
Pib [Oryza sativa].	334	1464	1e-169
Xa1 [Oryza sativa]	542	1180	3e-28
Mla1 [Hordeum vulgare].	635	1426	6e-49
I2 [L. esculentum]	646	1384	7e-40
Pi-ta [Oryza sativa]	650	1189	4e-44
RPM1 [A. thaliana]	684	1457	4e-59
RPS2 [A. thaliana]	684	1440	5e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3062.m00185

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)