Report for 3066.m00104

 > 3066.m00104, length: 1373, copies: 1 

MAEEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNKELDFVRMKTRLKV

RKLPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVK

DLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKP

FKDGAENATWRNRFPVVRGVAGKAANALVQSVTRVCGVDGDRRKLERQLLAVQCKLADAKAKSETKGPLTTLSET

NPAVKRWMKDLKAVAYEADDVLDDFEYEALRREVKIGDSTTRKVLGYFTPHSPLLFRVTMSRKLGDVLKKINDLV

EEMNKFGLMEHTEAPQLPYRLTHSGLDESADIFGREHDKEVLVKLMLDQHDQQNLQVLPIVGMGGLGKTTLAKMV

YNDPIVQKHFQLKMWHCVSENFEPISIVKSIIELATNRKCDLPDSIELLRRRLEGVIDRKRFLLVLDDVWNEDDN

KWNEHLRPLLNSVGGPGSIIVITTRNRRVASIMETLQPYKPACLSEDESWELFSKRAFGRDVQEQEDLVTIGKCI

VHKCKGLPLALKTMGGLMSSKHQVKEWEAIARSNIGDSVKGKDEILSILKLSYKHLPSEMKQCFTFCAIFCKDYE

MEKDMLIQLWIANGFIQEEGTIELSQKGEFVFNELVWRSFLQDVKTILFRSLDYDFVVCKMHDLMHDLAKDVSSE

CATTEELIQQKAPSEDVWHVQISEGELKQISGSFKGTTSLRTLLMELPLYRGLEVLELRSFFLERSNIHRLPDSI

CALYNLQSLRLNGCSYLECLPEGMANLRKLNHLYLLGCDRLKRMPPNFSLLNNLLTLTTFVVDTDAGRGIEELKQ

LRYLTNMLGLYNLRKIKSTSNAKEANLHQKQELSILRLFWGCMSSYMPGDKDNNEEEMLESLKPHSKLKILDLYG

YGGSKASVWMRDPQMFRCLKRLIIERCPRCKDIPTVWLSASLEYLSLSYMTSLISLCKNIDGNTPVQLFPKLKEL

ILFVLPNLERWAENSEGENNDVIIFPELESLELKSCMKISSVPESPALKRLEALGCHSLSIFSLSHLTSLSDLYY

KAGDIDSMRMPLDPCWASPWPMEELRCLICLRHLSFRACGKLEGKCRSSDEALPLPQLERFEVSHCDNLLDIPKM

PTSLVNLEVSHCRSLVALPSHLGNLPRLRSLTTYCMDMLEMLPDGMNGFTALEELEIFNCLPIEKFPEGLVRRLP

ALKSLMIRDCPFLVRRFQEGGEYFGLAPHVKLSQRQKAAEEAAGWMAPVFERLTGIRALADSARFKAWFLDQIGV

LHHGNMPYLVPSLHWERGEDGYH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	391	696	9e-87
NB-ARC [Pfam ls]	391	696	2.5e-87
LRR [Pfam ls]	830	853	0.54
LRR [Pfam ls]	1203	1226	0.6
LRR [Pfam ls]	1251	1275	1.8

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	807	829	2.1
LRR [sensitive, ls]	807	829	56
LRR [sensitive, ls]	830	853	0.02
LRR [sensitive, ls]	830	853	0.54
LRR [sensitive, ls]	854	877	0.4
LRR [sensitive, ls]	854	877	11
LRR [sensitive, ls]	1016	1039	1.8
LRR [sensitive, ls]	1016	1039	49
LRR [sensitive, ls]	1077	1099	0.66
LRR [sensitive, ls]	1077	1099	17
LRR [sensitive, ls]	1203	1226	0.023
LRR [sensitive, ls]	1203	1226	0.6
LRR [sensitive, ls]	1251	1275	0.066
LRR [sensitive, ls]	1251	1275	1.8

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	247	904	9e-53
I2 [L. esculentum]	268	1264	1e-119
Pi-ta [Oryza sativa]	293	904	7e-19
Mla1 [Hordeum vulgare].	305	882	2e-39
L6 [L. usitatissimum]	366	1288	2e-16
Pib [Oryza sativa].	397	879	6e-34
M [L. usitatissimum]	403	702	3e-16
Xa1 [Oryza sativa]	407	1260	9e-74
RPP5 [A. thaliana]	426	1267	1e-21
RPS2 [A. thaliana]	426	1093	3e-42
N [N. glutinosa]	430	1107	5e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Ribosomal protein L30p/L7e	87	139	5.2e-08

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	267	290

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3066.m00104

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)