Report for 3066.m00112

 > 3066.m00112, length: 1184, copies: 1 

MAESLLLPVVRGVVGKAAGALVQSVTRMCGVDGDRHKLERQLLAVQCKLSDAEAKSETSPAVKRWMKDLKAVAYE

ADDVLDDFHYEALRRDAQIGDSTTDKVLGYFTPHSPLLFRVAMSKKLNSVLKKINELVEEMNKFGLVERADQATV

HVIHPQTHSGLDSLMEIVGRDDDKEMVVNLLLEQRSKRMVEVLSIVGMGGLGKTTLAKMVYNDTRVQQRFELPMW

LCVSDDFNVVSLVRSIIELATRGNCTLPDRIELLRSRLHEVVGRKRYLLVLDDVWNEEEHKWEELRPLLHSAGAP

GSVVLVTTRSQRVASIMGTVPAHTLSYLNHDDSWELFRKKAFSKEEEQQPEFAEIGNRIVKKCKGLPLALKTMGG

LMSSKKRIQEWEAIAGSKSWEDVGTTNEILSILKLSYRHLPLEMKQCFAFCAIFPKDYQMERDKLVQLWIANNFI

QEEGMMDLEERGQFVFNELVWRSFFQDVKVESFHVGIKQTYKSITCYMHDLMHDLAKSVTEECVDAQDLNQQKAS

MKDVRHLMSSAKLQENSELFKHVGPLHTLLSPYWSKSSPLPRNIKRLNLTSLRALHNDKLNVSPKALASITHLRY

LDLSHSSKLEHLPDSICMLYSLQALRLNGCLKLQHLPEGMRFMSKLRHLYLIGCHSLKRMPPRIGQLKNLRTLTT

FVVDTKDGCGLEELKDLHHLGGRLELFNLKAIQSGSNAREANLHIQENVTELLLHWCHDIFEYSDHDFDLDVVDN

KKEIVEFSLPPSRLETLQVWGSGHIEMSSWMKNPAIFLCLKELHMSECWRCKDLPPLWQSVSLESLSLSRLDNLT

TLSSGIDMAVPGCNGSLEIFPKLKKMHLHYLPNLEKWMDNEVTSVMFPELKELKIYNCPKLVNIPKAPILRELDI

FQCRIALNSLSHLAALSQLNYVGDWSVSKDLQVIPIRSWPSLVTLALASLGNSLLPDEQQTTMPPLESIQKLSIW

YSSCFFSPNSSNWPFGFWDCFAFVEELSIVLCDDLVHWPVKELCGLNSLRCVRFSYCKNLTSSSSEESLFPSGLE

KLYIEFCNNLLEIPKLPASLETLRINECTSLVSLPPNLARLAKLRDLTLFSCSSLRNLPDVMDGLTGLQELCVRQ

CPGVETLPQSLLQRLPNLRKLMTLGSHKLDKRCRRGGEYWEYVSNIPCLNRDFIEERPC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	152	455	1.6e-89
NB-ARC [Pfam fs]	165	455	1.6e-89
LRR [Pfam ls]	597	620	2.3
LRR [Pfam ls]	621	641	4
LRR [Pfam ls]	645	668	4.2
LRR [Pfam ls]	1069	1092	3.2
LRR [Pfam ls]	1117	1141	6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	597	620	0.088
LRR [sensitive, ls]	597	620	2.3
LRR [sensitive, ls]	621	641	0.15
LRR [sensitive, ls]	621	641	4
LRR [sensitive, ls]	645	668	0.16
LRR [sensitive, ls]	645	668	4.2
LRR [sensitive, ls]	789	811	1.1
LRR [sensitive, ls]	789	811	29
LRR [sensitive, ls]	812	836	0.84
LRR [sensitive, ls]	812	836	22
LRR [sensitive, ls]	874	896	1.2
LRR [sensitive, ls]	874	896	33
LRR [sensitive, ls]	1069	1092	0.12
LRR [sensitive, ls]	1069	1092	3.2
LRR [sensitive, ls]	1093	1116	0.42
LRR [sensitive, ls]	1093	1116	11
LRR [sensitive, ls]	1117	1141	0.23
LRR [sensitive, ls]	1117	1141	6

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	14	676	3e-63
Pi-ta [Oryza sativa]	35	695	2e-23
I2 [L. esculentum]	37	1088	1e-110
Pib [Oryza sativa].	49	316	3e-12
Mla1 [Hordeum vulgare].	63	673	3e-50
Xa1 [Oryza sativa]	115	1158	1e-79
RPS2 [A. thaliana]	118	890	1e-43
L6 [L. usitatissimum]	126	1154	5e-21
Pib [Oryza sativa].	156	650	3e-42
N [N. glutinosa]	161	913	3e-24
M [L. usitatissimum]	166	1132	9e-20
RPP5 [A. thaliana]	166	1184	4e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	37	58
putative coiled-coil	118	138

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3066.m00112

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)