Report for 3066.m00116

 > 3066.m00116, length: 1955, copies: 1 

MAPTSVPLPSPPIPWLLLLLDPGEHGKMGQSEDRAMYEDGGGRLDDYCSITIDGSGGLSEDIIQQRLQSVVHQRE

ELQRLEMELRAQVIAHPQIIEAQRSFEAAAKEHVTAAAKLKEQLHEREKYILELEMKLDDKDRELDALKIDHQTV

WANQDLLREQTKELATFRRERDNSEAERAQHLKQIHDLQEHLREKESQMLALEEQHRAAQDNIIYKDEQLREAHA

WMARVQEMDTLQSQTMQAELRDRTEQFNQYWISFQQQYVEMQRGFLHTIQQLQLELNELRDRTGAPKDGSQTAQE

SSAESTLGQNKGNNMAANGSGTTDSSQSVKSNGVPDCSTKGNSNASPVPVVPSSLLGIGGFVPSAQIAGMHSYMM

HPQGVPPSLASPNSAVPQFGSFQSQSTIQPNMQWPNQQEAQNASQTPDETNYHTSPPDQKALQQAAGNNDELSLK

QNQATRAEHLTATAHGKQQQQQRFPSVVSESTHEQKLQVVESNVTEHLVYNEQQKAQDSSSIVSPIRKFEHQEQT

NEFKHLISKLYVHQDEKVASGNQSEEQVARHQHKASDFDASTTQIHLKGGAAEFTANVGNQTDTHTSAGGGLGSL

LPRIPKEPSLLDERSLLACIVRAVPAGPDGRIKISTTLPNRLGKMLAPLHWHDYKKHYGKLDDFVASHPELFVIE

GDFIHLREGAQQIISATTAAAKIAAVASSAPYSLLPSVAVTPVAQSTRQKRGPVVDSRSSNVMPSRNGSTTASFG

DQFDKGGHIPKPNDSVGYNIVQGIGDVTIASKVKDIQENGFSDEVRPGQSSMHAVSANGVRQERSGLPAGNTRHG

YGGKQQGRSSWFEGQIIHIRSPKALPTTVPVCFSKTENASCCDCNAVQRNMAESLLLPVVRGVAGKAADALVQSV

TRMCGIDGDRRKLERQLLAVQCKLADAEAKSETNPAVKRWMKDLKAVAYEADDVLDDFEYEALRREVKIGDSTTR

KVLGFFTPHSPLLFRVTMSRKLGDVLKKINELVEEMNKFGLMEHVEVPQLPYRLTHSGLDESADIFGREHDKEVL

VKLTLDQHDQQNLQVLPIVGMGGLGKTTLAKLIYNDPSVQEHFQLKMWHCVSENFEVGSLLKSIVELATNRRCQL

INTIELLRRQLEEAFGRRRFLLVLDDVWNDEENKWADDLKPLLNSVGGAGSVIVVTTRSQRVASIMGTLEPYELR

CLNEDDSWEVFSKRAFGKQVQEQAKLVSIGTRIVKKCRGVPLALKTMGGLMSSKQSVSEWEVIAESNIGARVQGK

NDVMDILKLSYRHLSPEMKQCFAFCAIFPQDYEMVKDELIQLWMANGFIQEEENMDLTHKGEMIFHDLVWRSFLQ

DVKEEFIIGYHCDSIVCKMHDLMHDLAKDVTDECASTTKELDQLKGSIKDVRHLRIPEEMEETMTELFKGTSSLH

TLIDRSWRSTLWNVSVEFNLASVRALRCSVINSAITNAKHIRFLDLSETSIVRLPDSICMLYNLQSLRLNSCDEL

EYLPKGCGIEELKDLQHLTNRLELYNLHKVKSEEKAKQANMYQKKNLSEVLFFWGRQKRCMPNDNAYNEERVLES

LAPYCSNLKVLELHGYGGVEIPEWMRDPHTFQRISKLNISNCPRCKDLPPVWLLVSLEELSLSCMDNLTTLCTND

DVEAEGCGTSLQIFPKLKKMFLRNLPNLERWAVNISGDPSSFITLPQLEILRISDCPKLAGIPDCPVLRDLNIDR

CSNIAVSSLAHVTSLSYLSYDAEGFDSMTMPLGSWSSLMRLKVRSLANMVISLEDQQNQGESNLVNLRRLNLHGP

KCFTTVSGFSELHHGIWVHFAFVEHLVIGDCHDIVRWPTEELRCLIRLRSLHIFKFTSLGINFSLSEEILYLSCL

EELNITSCSGIVEIPKLPASLEELFIQSCQNLVVPLPPNLGNLASLRNFIVIKCESLKLLPDGMDGLTSLRKLHL

DGCRG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	1024	1329	4.5e-82
NB-ARC [Pfam ls]	1024	1329	1.3e-82
LRR [Pfam ls]	1697	1719	1.9
LRR [Pfam ls]	1874	1897	6.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	1465	1487	0.62
LRR [sensitive, ls]	1465	1487	17
LRR [sensitive, ls]	1488	1516	0.32
LRR [sensitive, ls]	1488	1516	8.4
LRR [sensitive, ls]	1608	1630	0.95
LRR [sensitive, ls]	1608	1630	25
LRR [sensitive, ls]	1631	1668	2.9
LRR [sensitive, ls]	1631	1668	77
LRR [sensitive, ls]	1697	1719	0.071
LRR [sensitive, ls]	1697	1719	1.9
LRR [sensitive, ls]	1791	1813	2.2
LRR [sensitive, ls]	1791	1813	59
LRR [sensitive, ls]	1874	1897	0.24
LRR [sensitive, ls]	1874	1897	6.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	890	1518	1e-49
I2 [L. esculentum]	911	1915	1e-110
Mla1 [Hordeum vulgare].	938	1504	2e-41
Pib [Oryza sativa].	1030	1518	3e-33
Pi-ta [Oryza sativa]	1033	1496	3e-18
M [L. usitatissimum]	1036	1380	1e-16
Xa1 [Oryza sativa]	1040	1953	5e-71
L6 [L. usitatissimum]	1044	1954	2e-21
RPP5 [A. thaliana]	1059	1955	3e-18
RPS2 [A. thaliana]	1059	1713	7e-39
N [N. glutinosa]	1063	1901	2e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	123	148
putative coiled-coil	192	213
putative coiled-coil	909	933

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3066.m00116

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)