Report for 3068.m00169

 > 3068.m00169, length: 755, copies: 2 

MGRGTSKPPIIGRDDQQQELEAMLLSSAGCLAVIYVVGDSGVGKTILVNSVCSKPSVREHFKERIGVKVGKDAGI

SNILSLISKELKKENNESDNENPRSKIQRRLGEECYLIIIDGRQMSIADWNAVIHALPKNERGSRVVLITKIKPQ

FLDHPMNDVHEIKLTCLNQTDCRKLFHMRLHGKEEDEQNQTYLPIYYQRVYDITGGSPLAVILLAGLMHNKEYPH

EWDRVLKYLESAKEKRLNRILSLSFDDLHHELKLCFLYFTAFPVSYKVYQNVLVNLWVSEGFVVPRHGKTVQQLG

QLYLRQLTTRGLVTEASADGDYDIRHFFLHDSVYLFARSEAHEANFMELHDGDYFPSPDRARRLTLHNSMDRYAA

LDNKMPKLRSIFAIFEEIPASTAEESVSSPSCFPTCCSCEQHRSPKISRFDLTKLLKRSKFLRVIMIEGLNIGTE

LPEAIGGMVHLRYLSTRCRSLRRIHPSIGNLKNLQTIDVRQSLVHELPCSFWKITSLRHVFGSELIVPRWTRELK

QLNTLKSVRALQDWDGSMLRRMVNLKLLDVTIQEKLKEEKARKLSDNLNNLNNLTTLILKGVDLPISSIFTAPSL

QFLKTIELTGTILLTTPSPEIDKMTTSPSDFQLPNLSKLSLSKTCLQQGFIGKLGKLPLLSNLTLKDVSCDGEEL

VFRPDGFHCLKKLEVNDTSKRVVIEEHALPVLVSLHIIGNSRNYQHSIHPTHKIINKIRHEDINLFQRICTCHQK

EITKG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	1	293	2.1e-27
NB-ARC [Pfam fs]	6	116	2e-09
NB-ARC [Pfam fs]	204	293	1.6e-25

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	436	459	1.7
LRR [sensitive, ls]	436	459	45
LRR [sensitive, ls]	483	505	0.77
LRR [sensitive, ls]	483	505	20
LRR [sensitive, ls]	602	625	0.89
LRR [sensitive, ls]	602	625	24
LRR [sensitive, ls]	635	664	0.4
LRR [sensitive, ls]	635	664	11
LRR [sensitive, ls]	684	708	2.5
LRR [sensitive, ls]	684	708	66

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	6	736	9e-45
Xa1 [Oryza sativa]	7	660	2e-27
I2 [L. esculentum]	10	695	4e-26
Pib [Oryza sativa].	10	510	7e-27
Pi-ta [Oryza sativa]	10	558	1e-30
Mla1 [Hordeum vulgare].	31	705	5e-30
RPS2 [A. thaliana]	33	492	2e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3068.m00169

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)