Report for 3083.m00104

 > 3083.m00104, length: 646, copies: 1 

MASSGRRRDVLLLLLLLVLVARAAAADMAGDRAALLALRDAVGGRHLPWDPSAPTPCGGAWRGVGCSASGDRVTE

LRLPGKSLRGAVPVGTVGNLTALRTLSLRMNAISGGIPADIGGCVQLRSLNLSGNRLAGGLPEGLFSLALLEKVD

LSGNRLTGGVSPEFSRLASLTTLNLDRNGFDGTLPGNLTLPNLARFNVSYNGQLGGAVPASLAGMPASASLGTSL

CGAPLAPCANPSQTPPSPPGDSKGGGKLSRGAIIGIVLGAVAALVVALTVGFLACFRRRATAPRSRSTAAAAAAH

DVAEPITVTVARTDMDAAVKQSHSPPPPGEGSTKLVFVGGAPERPYDLDTLLRASAEVVGKGAAGTTYRATLDGG

EPVLAVKRLREVSLSEREFRDRVAAIGAVSHDSLPRLLAYFYSREEKLLVYEFVVGAGSLAALLHGNGEKLDFAA

RARIALAVARGVAFIHRGGPISSHGDIKSSNVVVTATRDAAYVTDYGLAQLVGGAAAPPTTKRGAGYRAPEVVDA

RRVSQSADVYSFGVLLLELLSGRPPLDATPDGGAAVDLPRWMRSVVQEEWTSEVFDAAIGNEARTEGEMMRLLQL

GMECTEHHPDRRPAMAEVEARIERIVEDACRNADSGSTDGSRSMSA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	121	144	0.024
LRR [Pfam ls]	145	168	0.24
LRR [Pfam ls]	169	189	1.7
Ser/Thr pkinase [Pfam fs]	353	555	9.6e-23
Ser/Thr pkinase [Pfam ls]	353	618	4.6e-16

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	97	120	0.52
LRR [sensitive, ls]	97	120	14
LRR [sensitive, ls]	121	144	0.00089
LRR [sensitive, ls]	121	144	0.024
LRR [sensitive, ls]	145	168	0.009
LRR [sensitive, ls]	145	168	0.24
LRR [sensitive, ls]	169	189	0.064
LRR [sensitive, ls]	169	189	1.7
LRR [sensitive, ls]	192	216	0.57
LRR [sensitive, ls]	192	216	15

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	27	209	4e-17
FLS2 [A.thaliana]	61	224	2e-14
Xa21 [O. sativa]	61	221	8e-16
CLV2 [A. thaliana]	67	185	3e-13
Xa21 [O. sativa]	72	212	1e-14
FLS2 [A.thaliana]	76	625	1e-37
FLS2 [A.thaliana]	76	225	7e-16
FLS2 [A.thaliana]	76	215	2e-11
FLS2 [A.thaliana]	76	209	5e-11
Xa21 [O. sativa]	76	224	3e-13
Xa21 [O. sativa]	82	209	3e-11
FLS2 [A.thaliana]	83	212	3e-15
Cf-9 [L. pimpinellifolium]	101	278	2e-11
Rpg1 [Hordeum vulgare]	354	625	8e-11
Rpg1 [Hordeum vulgare]	358	625	9e-18
Pto [L. esculentum]	359	623	2e-20

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	9	26	in -> out
putative TM domain	259	281	out -> in

Report for 3083.m00104

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)