Report for 3089.m00183

 > 3089.m00183, length: 1141, copies: 2 

MAEGVVFAALCKIGSVLASSASITLGGRLDANLTIINEIESRIKQIEVELKLMQAFLRQAQKQEGYSEPTEVYLQ

EVRKAAFEIEDIIDEFLYLSVKHKNRFFNGEFMSYFRKLGKTSWHKIARELKDSQCHLQNLRNLWVQYEIQLPNG

NRVSTDVEDHRLPHHLSYPADEMVGVEQERTMMMNWLKTCSTSVITVWGMGGSGKTTLANSIYEDERIKNQFDCH

IWITVSQKFNASDIMRKMVRHMLQRCSPNIDSIDGRDLVEILKRTLEHRKILLVLDDVWSTDVWMDLASTVERSN

NNGNKVVITTRIKDVASLASEDQVLQLQKLNDADSWCLFCRWAFKNRIDRSCPQELESLGREIMVKCDGLPLAIV

VVGNMLSFKKQDMEEWSKCNDQLTWELRDRLRDQELSSVMKILKLSYKNLPSHLKNAFVFCSIFPEDYMITKKRL

VRLWVAEGLIKPEKRRTVEEVAEEYLNELIDRCLLQVVERKHFRKVKEFQMHDIVRELAISISEDETFCMTHSKS

HPGEPEYRCRRLSIHEHNDRIKSVSDPSRLRSLYHFDVTCSSFPSVGTPRSARYLNVLELQDVPITVLPEELSGL

FNLRYLGLRRTKIKQLPQSVDKLFNLQTLDVYLTNVDKLPTGIAKLKRLRHLLAGKLSAPLYCGIVEKSRGVQAP

KVVWESMELQTLKGVLANLNLVENLGHMTQLRTLAIEDVGEEHYPKLFASISKMRSLRTLKVLSAEGNQGLNFEA

LSLPPQNLRKLHLTGRFHHAVMESNFFQTVGAKLEKLYLTGSKTNIDPLISISCLSNLKVLQIGDAYDGASFVFQ

SGWFPKLHTLIMCNLLHINSMIMEQQTLQNLQWLALVNFPELKEVPHGIELLLSLQNLMLVNMHDEFMERIQGQE

DPLGTMSRLMDRCLNDDETVIDAGMCNYGGLGVPNLELMGIALRSRWTWLQRTSSSKPWQGLAIPGSQKERNFVA

ASTICQLRDGQTILFWEDSWLQEGCIRSFAPNIYDKIPPRVRRCRTVAEALTGRQWIKDIRGALGIQPILEYLKL

WSLVQMVDLDPTTPDSIIWKWESSGQYSSKSAYKALFFGRVTFLSTPIWKSLAPPRCRFFLWLVAMNRCWTADRL

RSRGLPHPDRCVRCDQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	156	465	9.9e-89
NB-ARC [Pfam ls]	156	465	2.7e-89

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	579	601	0.74
LRR [sensitive, ls]	579	601	20
LRR [sensitive, ls]	602	624	0.28
LRR [sensitive, ls]	602	624	7.3
LRR [sensitive, ls]	625	647	0.43
LRR [sensitive, ls]	625	647	11
LRR [sensitive, ls]	734	762	0.87
LRR [sensitive, ls]	734	762	23
LRR [sensitive, ls]	783	809	2
LRR [sensitive, ls]	783	809	53

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	13	784	3e-68
RPM1 [A. thaliana]	19	899	1e-111
Mla1 [Hordeum vulgare].	25	760	3e-66
RPP5 [A. thaliana]	29	652	4e-14
Pib [Oryza sativa].	52	331	2e-14
L6 [L. usitatissimum]	77	565	2e-20
M [L. usitatissimum]	77	890	2e-23
Xa1 [Oryza sativa]	162	654	4e-50
RPS2 [A. thaliana]	169	871	4e-39
Pib [Oryza sativa].	172	867	1e-60
Pi-ta [Oryza sativa]	172	630	2e-41
N [N. glutinosa]	194	508	4e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	34	55

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3089.m00183

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)