Report for 3091.m00127

 > 3091.m00127, length: 845, copies: 1 

MAEEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNKELDFVRMKTRLKV

RKLPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVK

DLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKP

FKDGAENATWRNRFPVVRGVAGKAANALVQSVTRVCGVDGDRRKLERQLLAVQCKLADAKAKSETKGPLTTLSET

NPAVKRWMKDLKAVAYEADDVLDDFEYEALRREVKIGDSTTRKVLGYFTPHSPLLFRVTMSRKLGDVLKKINDLV

EEMNKFGLMEHTEAPQLPYRLTHSGLDESADIFGREHDKEVLVKLMLDQHDQQNLQVLPIVGMGGLGKTTLAKMV

YNDPIVQKHFQLKMWHCVSENFEPISIVKSIIELATNRKCDLPDSIELLRRRLEGVIDRKRFLLVLDDVWNEDDN

KWNEHLRPLLNSVGGPGSIIVITTRNRRVASIMETLQPYKPACLSEDESWELFSKRAFGRDVQEQEDLVTIGKCI

VHKCKGLPLALKTMGGLMSSKHQVKEWEAIARSNIGDSVKGKDEILSILKLSYKHLPSEMKQCFTFCAIFCKDYE

MEKDMLIQLWIANGFIQEEGTIELSQKGEFVFNELVWRSFLQDVKTILFRSLDYDFVVCKMHDLMHDLAKDVSSE

CATTEELIQQKAPSEDVWHVQISEGELKQISGSFKGTTSLRTLLMELPLYRGLEVLELRSFFLERLKLRSLRGLW

CHCRYDSSIITSHLINTKQL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	391	696	9e-87
NB-ARC [Pfam ls]	391	696	2.5e-87

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	247	748	3e-46
I2 [L. esculentum]	268	824	2e-83
Pi-ta [Oryza sativa]	293	719	1e-17
Mla1 [Hordeum vulgare].	305	750	3e-36
L6 [L. usitatissimum]	366	747	1e-14
Pib [Oryza sativa].	397	750	1e-29
M [L. usitatissimum]	403	702	3e-16
Xa1 [Oryza sativa]	407	832	7e-60
RPS2 [A. thaliana]	426	768	9e-34
N [N. glutinosa]	430	745	2e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Ribosomal protein L30p/L7e	87	139	5.2e-08

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	267	290

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3091.m00127

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)