Report for 3104.m00101

 > 3104.m00101, length: 994, copies: 1 

MAETAVSASKGVIGALFEKLTKLVEDKCTNLVGMSKNIVFLKDELPTMSALLEKLEDADELDPVVKAWRNQVREM

AYDIEDCIDDFVHHVGGGDVEAGFIDKVSHFLRTLRARLETAEHIKDLKIQLIEINERHKRYKFDLDDTPSSSFV

AIDPRLPALYSEAANLVGIEGPREQVIKWLTDADQQIMVLPIVGFGGLGKTTLAKEVYQKIGQQFNTTEFVSVSQ

RPDVTRFLKGIQSKLPIRLSSEYCEVKDIIDNIRAYLQHRRYLFVVDDLWDAPTWNIIRSVFPENGMGCRIIVTT

RSEDVARWVCCNHRRFIYRMEPLSDENSRWLFFNRIFGSEDGCPSQFREISAQILKKCSGLPLAIITIASLLANQ

PAPHKKEYWESIRNSIGTWGSGTNPTLEGMRQILHLSYKDLPRHLRTCFLYLGIYPEDFTIKKDDLIRQWLAEGF

VHHFHGGSSEEVAKSYFNELINRSLIQPEETKYGEVVSCRVHDMMLDLILSRCAEDNFICVAYNLEELSGKHEFK

VRRLLVDSRVGDSGDTKISGTPAPRLLQLRSLQLFGVSVSLSLLPLSKYIRVLILHLGKTGTGGNERVDVTAIGQ

LFQLRYLKIVSLHHALVLELPTEIRGLQYLSTLEIDCTNENSLPSDIVHLSRLSHLIVPSGIGLPDGKIGSMKSL

CTLQKIEILDIKSAIGLGELTNLKDLELYSKQALSEREIDALVTSLGKLHKLISLRMSKFAECIWYDEDNRLGSL

SNPPLNIERLHLGGWRLRRVPRWINGHLQNLCFLVLDVTEMSTDEVRLLGELPSLSELCLSVKRLAPCSASLVFG

AGFPALECLEFFCGGDISHLCFEAGVMPNLRKIILFYIDIEWSGTAPVGIEHLLNKQLRYIQLHPVTDTAVDAER

ISLAFTEAIRAHTSRGGAEPYLRFARIRSGSLIGANSLIRHSFTCHRVSALFLLNHILAILFSKFILCISVLSLL

FWLYAYLAEYWKLFHFQND

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	151	456	2.7e-64
NB-ARC [Pfam ls]	151	456	1.1e-64

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	5	698	4e-93
Mla1 [Hordeum vulgare].	11	858	1e-115
RPM1 [A. thaliana]	19	901	7e-66
I2 [L. esculentum]	41	810	1e-47
Pib [Oryza sativa].	49	335	2e-15
Xa1 [Oryza sativa]	157	758	3e-30
Pib [Oryza sativa].	161	858	3e-56
M [L. usitatissimum]	162	411	2e-11
N [N. glutinosa]	165	498	3e-12
RPS2 [A. thaliana]	165	762	2e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	957	979	out -> in

Report for 3104.m00101

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)