Report for 3104.m00104

 > 3104.m00104, length: 891, copies: 1 

MMRRRCSGSHGRQLLLLYWLVIACSWVAAAQAQQAPRTDPVEVAALNAILGRWGTNPPKTWNITGGDPCTGTAVD

DTNIDDSPVVNPGIKCDCSFNNRTVCHITKLNLQQNYLTGPVPSFIGKLTFMQYLGIGSNNFTGELPEELGNLTK

LEQLYIDSSGFSGPFPSTLSKLKNLEKLWASDNDFTGKIPDYLGTLTKLVELRFQGNSFQGPIPASLSNLSNLTS

LRIGDIVNGSSSLAFISNLTSLNILILRNCKISDNLRTVNFSKLGRLTLLDFSYNQLTGSFPSWVTNNNLQFILP

SGLNCLQQDTPCLLGSPEYYSFAVDCGSNKSMKGSDNTIYEVDAANLGVASYYVTRNTRWGVSNVGIFNDASSRN

YVINSSQQFQNTLDSELFQTARMSPSSLRYYGLGLENGNYSVKLQFAEFAYPDSKTWESTGRRIFDIYVQGVLKE

KNFDIRKAVGGKSFTAVNKIYNTIVSKNFLEIHLFWAGKGTCCIPTQGYYGPMISALSVTPNFTPTVRNGEPKKK

SKAELYNLAGRPNVFSNAELKLATENFSSQNMVGEGGYGQVYKGKLPDGRVIAVKQLSQSSHQGKSEFVTEVATI

SAVQHRNLVKLHGCCIDSNTPLLVYEYLENGSLDRALFGSKSFNLDWPTRFEIVLGVARGLTYLHEESSVRIVHR

DIKASNVLLDTDLTPKISDFGLAKLYDEKKTHISTKIAGTLGYLAPEYAMRGHLTEKADVFAFGVVALETVAGRP

NTDNSREEDKIYLFEWAWTLYESGQALGIVDPKLKEFNEKEALRVICAALLCTQGSPHQRPSMSRVMAILAGDIE

VTEVVTKPSYITEWQLRGGGDTSYATSSYYSGSTTGEFREKRETAPLNSYPGIAGRIDEGRLGLYN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	102	125	0.2
LRR [Pfam ls]	126	149	2.2
LRR [Pfam ls]	174	197	0.42
LRR [Pfam ls]	198	221	0.15
LRR [Pfam ls]	271	294	1.1
Ser/Thr pkinase [Pfam fs]	552	750	5.1e-51
Ser/Thr pkinase [Pfam ls]	552	822	7.1e-47

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	102	125	0.0075
LRR [sensitive, ls]	102	125	0.2
LRR [sensitive, ls]	126	149	0.083
LRR [sensitive, ls]	126	149	2.2
LRR [sensitive, ls]	150	173	0.28
LRR [sensitive, ls]	150	173	7.4
LRR [sensitive, ls]	174	197	0.016
LRR [sensitive, ls]	174	197	0.42
LRR [sensitive, ls]	198	221	0.0055
LRR [sensitive, ls]	198	221	0.15
LRR [sensitive, ls]	246	270	0.55
LRR [sensitive, ls]	246	270	15
LRR [sensitive, ls]	271	294	0.043
LRR [sensitive, ls]	271	294	1.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	60	315	3e-23
FLS2 [A.thaliana]	62	298	7e-24
FLS2 [A.thaliana]	88	310	5e-21
Cf-9 [L. pimpinellifolium]	98	301	1e-10
Xa21 [O. sativa]	100	344	3e-13
Cf-9 [L. pimpinellifolium]	102	294	3e-17
Cf-9 [L. pimpinellifolium]	102	342	7e-13
FLS2 [A.thaliana]	102	318	1e-21
FLS2 [A.thaliana]	102	315	5e-20
FLS2 [A.thaliana]	102	288	1e-18
Xa21 [O. sativa]	102	288	2e-14
FLS2 [A.thaliana]	103	260	8e-14
Xa21 [O. sativa]	103	311	2e-17
Xa21 [O. sativa]	103	298	6e-16
CLV2 [A. thaliana]	106	329	6e-14
CLV2 [A. thaliana]	106	287	9e-13
CLV2 [A. thaliana]	106	380	1e-11
FLS2 [A.thaliana]	106	287	3e-23
FLS2 [A.thaliana]	106	292	2e-22
Xa21 [O. sativa]	106	216	1e-11
Xa21 [O. sativa]	127	315	1e-12
FLS2 [A.thaliana]	523	820	5e-40
Pto [L. esculentum]	540	830	1e-55
Rpg1 [Hordeum vulgare]	540	817	2e-29
Rpg1 [Hordeum vulgare]	545	817	1e-35

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	13	30	in -> out

Report for 3104.m00104

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)