Report for 3117.m00117

 > 3117.m00117, length: 930, copies: 1 

MELGAWELDSMAPGAHASLNSDQEETSSEYVTTIKRGRSNPRQLQALMVNASSLKVLQHLQPSPFSEKLVGILRE

EFVKTLFVRRDIRRLRESLKYFDSVREDADALALENRVTGTWWSDVKDVMYDVDDIVDFLRAHSYKQRCCDRVLF

SRLAQLPLDYRIARRIKYVNERLVQITMNSKMFVPLAMRSPQTLQRNGVSRYVAALVDELDVVGREIKETTDDMV

QMIIGCGHQSTISVYGILGMGGIGKTTLAQKIYNDRRIRERFHHVLIWLSISESISETDLLKEAIEKAGGQSYQG

KSKDQLLQALLNCITGQSIFLVLDNMTSSHIWIDLLRSPIERCADAHIVKKCDGLPLAIKAVAGVLSSKATKEEW

ARVLESRWCYEGLPEEIQGPLYLSYNDLSPQLKSCFLWCALMPQNFHIHRDVTYFWIAEGFVKKEGSRPIQEVAE

DYYHELIMRNLLQARPEYIDKGISTMHDLLRLLGQYLTRDVAVFMDEDETPPNVRRLAVGNAVEEIPGIQDQKNL

RCLLVYHHDACRSVKRDIYRKLEHLRILILVGAGLQSIPESVGHLVLLRLLDVSCNEEIKQLPGSIGNLTCLEHL

SVSGCEKLASLPASLMTLSTISFLNIVFQDGTGGFRLDELDSLSKIRRLLLIKLEKASPPASPVLCNKRHLKELG

LTCTMGEEADCRTSYEDSEVKNIEEIYNKLCPSRKLQYIFIDGFPELPPAGQLPMLQVLHVKGADAVVSIGHELF

GKGVVSPTHTIIFPKLELLEIVDMYNWQSWSVSTESLSDGTSETISRSVFLMPCIRYLQLINCPKLRALPEDLHR

IVNLRRVLIEGVHSLQEIVYHPGIVWLKVKNNKSLRRISNLSKLQLLLAQDCSELQQAEELSSLKTLYMVDCPME

QMFWDCFSKEQQSMMTHVVVGIRVGYDSIN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	196	442	2.2e-15
NB-ARC [Pfam fs]	241	287	5.2e-13
NB-ARC [Pfam fs]	348	442	7.1e-25
LRR [Pfam ls]	549	571	5.2
LRR [Pfam ls]	572	595	0.75
LRR [Pfam ls]	596	619	2.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	549	571	0.19
LRR [sensitive, ls]	549	571	5.2
LRR [sensitive, ls]	572	595	0.028
LRR [sensitive, ls]	572	595	0.75
LRR [sensitive, ls]	596	619	0.092
LRR [sensitive, ls]	596	619	2.4
LRR [sensitive, ls]	804	827	1
LRR [sensitive, ls]	804	827	28
LRR [sensitive, ls]	868	890	1.3
LRR [sensitive, ls]	868	890	34

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	56	691	9e-16
RPM1 [A. thaliana]	68	633	5e-30
I2 [L. esculentum]	87	816	5e-45
Xa1 [Oryza sativa]	162	881	2e-22
RPS2 [A. thaliana]	215	911	8e-25
Mla1 [Hordeum vulgare].	348	682	9e-22
Pib [Oryza sativa].	348	625	8e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3117.m00117

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)