Report for 3125.m00121

 > 3125.m00121, length: 1011, copies: 1 

MGTQAEAFLTSCVDRIVNLLEEHAVMILGVKDDLKKLQAKVELIKAVLQDAERKKLQYRTIEIWLNSLKDVLYEA

DDIIDLCRTKARELLEEQPSSSIQQRKMHCSLLSFFSTVRLRHKIGSKIRKLSDRLTDIENNRLVLSLCHLKPCE

QQDTTVNIEDSTRKIVDMIFSHEDNFKIVAVTGMGGIGKTTLAQRVYNHVKIKNFYPTTIWICVSRKFSEVELIQ

EIIRQARGDYGQAKTKAELLPIMANTVANKCLFLVLDDIWSADVWNALLCTPLHSTPRCGCVLVTTRHQDVARSI

KAMYIHEVQKLHTRSSLELLWEEIVRKCDGLPLAIKLIGSLLARKGHNPQQWSDVLRSGIWNMKELPGKLKGAWG

ALYMSYEDLPPHLKQCFLSLSLFPADYDLAIWDLRALWVAEGFLHPKEQLIAEELAENCYAELVSRSLLQPIVLY

ADQRKCRMHDLLRSLAQYLSRGESLCGDPRKLDAFSLSKIRRLSVLMDEEVEEEADPLTRSQRKNLSLRTLMLLE

GTSIFQRETIFSFPCLRVLVLNGKAIENLPSSIENLLHLRMLNLNYTSIASLPMSIGSLKNLQILYLIRCLRLHS

LPASITQLDDLRCLGLNGTPVTHVPKGLGKLKLLNDIGGFVAGGHTTCQTELQEGWGLEELESLAQLRWLSITRL

ERAMISKPMLKSKCFLRHLILSCTMPQYKKLSFEEINTIEAIFEGLFPPPSLEKLQIINFCGQSLPGWLISSSLE

TNLPCIEYIHLIGCSFCTQLPPFGKLPQLRYLNIEDAFAIVNIGTEFVGMHGVSTAFPKLEYLTFNGMPNWEEWS

MSGNEEEEEPSMPHLVELQILGCPKLRSLPTTLQKITTIQTIGITKCDSLTCVTNFRYLHNQLVIEKSSGVEIIS

NLPALNKLVITDVHALKHIEHLPSLRYMELCSSSLDKLPEWLQGLADTNRKLANDLQLTLRCSITLMRRCVRKGP

DWPTIRRFPHVSVYTHDRSALMEYNHEAGYYFTNLQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	138	424	4.9e-49
NB-ARC [Pfam fs]	151	320	9.7e-26
NB-ARC [Pfam fs]	322	424	1.3e-25
LRR [Pfam ls]	563	585	3.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	540	562	2.2
LRR [sensitive, ls]	540	562	56
LRR [sensitive, ls]	563	585	0.14
LRR [sensitive, ls]	563	585	3.7
LRR [sensitive, ls]	586	609	0.81
LRR [sensitive, ls]	586	609	21
LRR [sensitive, ls]	610	632	0.25
LRR [sensitive, ls]	610	632	6.5
LRR [sensitive, ls]	755	777	0.3
LRR [sensitive, ls]	755	777	7.6
LRR [sensitive, ls]	778	801	1.3
LRR [sensitive, ls]	778	801	34
LRR [sensitive, ls]	839	862	1.5
LRR [sensitive, ls]	839	862	37
LRR [sensitive, ls]	924	946	0.31
LRR [sensitive, ls]	924	946	8.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	5	614	7e-42
Mla1 [Hordeum vulgare].	9	694	2e-41
I2 [L. esculentum]	34	872	4e-69
Pi-ta [Oryza sativa]	60	635	8e-31
N [N. glutinosa]	124	784	1e-13
L6 [L. usitatissimum]	151	990	4e-19
M [L. usitatissimum]	151	982	5e-16
Pib [Oryza sativa].	151	591	5e-36
Xa1 [Oryza sativa]	165	855	4e-37
RPS2 [A. thaliana]	171	855	8e-33

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	30	57

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3125.m00121

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)