Report for 3174.m00141

 > 3174.m00141, length: 856, copies: 2 

MDAVVSVSHGALGPLLGKLSTLLADKYACLKGVRREIHSLRSELSNMQAALHKYASLEDPDIQVKAWITELRELA

YDIEDCIDKFMHQLGANGEQHRTSNSIEDFFRKSIQRLKTLGPRHNIAGEIEELKARVISVRDQKNSYKLDDIFC

SSSSNTNASVDPRLATLFAEENHLVGIDGPRVELVNWLDAESRLIKCRKVLSIVGFGGLGKTTLANEVYRRVKVH

FDCHAFVSVSQKPDFKNIFKDITYNMPTKDGFLKDIDTWNEKKFIEKLRELLVDKRYLVIIDDVWSISAWKAITV

AFPDNDCSSTIIVTTRVSDVGWSCCLNGIDRNYQMEPLSEVHSGRLFCKRIFSTNEDGCPDILQEVSTDILKKCG

GLPLAIISISGLLANRPVIKEEWEKVKESIGFALDKNQNLEGMKIILSLSFNNLPNYLKTCLLYLSIFPEDCIIE

RNMVVWRWIAEGFISEDCGQKLEDVAESYFYELINKSLVQPVDIGFDGLEQYLENIDKLFQLEYLSLCCSNISHI

PTQIAKLQNLVTLDLRQTCVEEFPTEFCRLIKLQHLLGDRMLKLPDGIGNMRNLQVLSGINISSSSASAVAELGE

LTSLRDLKISLSDKLSKCKTKEEMLLASLCKLSSYKLQSLHIIDHSTDDFLERWFPIPCFLRLFHMITDYYLLQL

PKWVKPYLTKMAYLSINLREIKKEDMETLGDLPALLSLEIWLEPDPKEQLTVQSTGFLFLKEFVLACSDHNGGAY

LTFEKGAMPKLEKLEILFHVLMAEPHDFYFGINNLQHLKEVEVFIYRVGAEDSDAEAAVAAIRSEANANPNHPRL

AIKEAYVEEISNKECDDNKDAEDQQGGVTVN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	159	469	6.5e-67
NB-ARC [Pfam ls]	159	469	1.9e-67
LRR [Pfam ls]	511	533	1.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	511	533	0.047
LRR [sensitive, ls]	511	533	1.1
LRR [sensitive, ls]	534	556	0.27
LRR [sensitive, ls]	534	556	6.4

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	3	851	3e-83
Mla1 [Hordeum vulgare].	10	610	4e-97
RPM1 [A. thaliana]	16	492	1e-54
I2 [L. esculentum]	37	615	4e-41
Pib [Oryza sativa].	58	324	8e-12
M [L. usitatissimum]	71	443	1e-14
Pib [Oryza sativa].	169	491	2e-42
RPS2 [A. thaliana]	198	671	2e-23
Xa1 [Oryza sativa]	200	532	2e-25
Mla1 [Hordeum vulgare].	499	828	4e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3174.m00141

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)